View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5720-Insertion-4 (Length: 385)

Name: NF5720-Insertion-4
Description: NF5720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5720-Insertion-4
NF5720-Insertion-4
[»] chr7 (2 HSPs)
chr7 (8-385)||(46709150-46709527)
chr7 (28-93)||(46708205-46708270)
[»] chr1 (2 HSPs)
chr1 (43-381)||(36926068-36926406)
chr1 (14-104)||(47126844-47126934)
[»] chr8 (12 HSPs)
chr8 (43-209)||(6262242-6262408)
chr8 (43-92)||(6273451-6273500)
chr8 (43-92)||(6389882-6389931)
chr8 (44-92)||(6368901-6368949)
chr8 (46-94)||(6423160-6423208)
chr8 (43-94)||(6351240-6351291)
chr8 (41-92)||(6456154-6456205)
chr8 (45-92)||(7457983-7458030)
chr8 (45-92)||(7470385-7470432)
chr8 (41-95)||(6449687-6449741)
chr8 (43-92)||(6362125-6362174)
chr8 (41-89)||(6409129-6409177)
[»] chr5 (1 HSPs)
chr5 (31-92)||(9606278-9606339)
[»] chr2 (2 HSPs)
chr2 (49-92)||(42692174-42692217)
chr2 (129-173)||(42692254-42692298)


Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 8 - 385
Target Start/End: Original strand, 46709150 - 46709527
Alignment:
Q  8 ttattrttggacggtttggtgagtaacctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatataatgattgtgcatgt 107  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46709150 ttattgttggacggtttggtgagtaacctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatataatgattgtgcatgt 46709249  T
Q  108 ttccgtcaactcttccactgtttgcatctttggccaccaaggctcgtttttcttgtcgccgtgaccttcttgtatcaattccttccaccaagattgtagt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46709250 ttccgtcaactcttccactgtttgcatctttggccaccaaggctcgtttttcttgtcgccgtgaccttcttgtatcaattccttccaccaagattgtagt 46709349  T
Q  208 tctgcatctttctttaccatgtcatcattcttgtagtaaaaggaacagtagtcctgaacccatgtgttgattgcaaaccaaatctctggcccatccaccg 307  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  46709350 tctgcatctttctttaccgtgtcatcattcttgtagtaaaaggaacagtagtcctgaacccatgtgttgattgcaaaccaaatctctagcccgtccaccg 46709449  T
Q  308 cgtaagggtaatcgttgactattagtcgaaggccatgcggagaagctgaatctttaattgccattcctctgaaagaac 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46709450 cgtaagggtaatcgttgactattagtcgaaggccatgcggagaagctgaatctttaattgccattcctctgaaagaac 46709527  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 46708205 - 46708270
Alignment:
Q  28 gagtaacctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatata 93  Q
    ||||||| |||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  46708205 gagtaacttgcataaggatattgtccaaattttacagctgcatgtagggctgaagcaatccatata 46708270  T

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Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 43 - 381
Target Start/End: Complemental strand, 36926406 - 36926068
Alignment:
Q  43 ggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatataatgattgtgcatgtttccgtcaactcttccactgtttgcatctttggcc 142  Q
    ||||| ||||||||||| || || ||||| ||||||||||||||||||||||| || ||||| |||||  ||| |||||| |  || |||||||||||||    
T  36926406 ggatactgtccaaagttgactgcagcatggagagctgaagcaatccatataataatagtgcaagtttcaatcagctcttcgagagtatgcatctttggcc 36926307  T
Q  143 accaaggctcgtttttcttgtcgccgtgaccttcttgtatcaattccttccaccaagattgtagttctgcatctttctttaccatgtcatcattcttgta 242  Q
    |||||||||| | ||||||||| || ||||| ||||   | | |||||||||||||||||| ||||| |  |||||||| |    ||| |||| ||||||    
T  36926306 accaaggctcatctttcttgtcaccatgaccctcttcccttatttccttccaccaagattgaagttccgagtctttcttgattgagtcctcatccttgta 36926207  T
Q  243 gtaaaaggaacagtagtcctgaacccatgtgttgattgcaaaccaaatctctggcccatccaccgcgtaagggtaatcgttgactattagtcgaaggcca 342  Q
    ||||| ||| |||||||| | ||||||||| ||||| ||||||||||||||  | ||||| || || ||||||||||| | || || || |||||| ||     
T  36926206 gtaaatggagcagtagtctttaacccatgtcttgatggcaaaccaaatctccagtccatcaactgcataagggtaatcctcgattaataatcgaagaccg 36926107  T
Q  343 tgcggagaagctgaatctttaattgccattcctctgaaa 381  Q
    |  || |||| ||| || ||||  |||||||||||||||    
T  36926106 tatggcgaagttgagtccttaacagccattcctctgaaa 36926068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 47126844 - 47126934
Alignment:
Q  14 ttggacggtttggtgagtaacctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatataatgattgtgca 104  Q
    ||||||| ||||||  |||||||||| |||| |||||||||||||| ||||||||||| | ||| ||||| | ||||||||| || |||||    
T  47126844 ttggacgatttggtaggtaacctgcataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatataataatggtgca 47126934  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 209
Target Start/End: Original strand, 6262242 - 6262408
Alignment:
Q  43 ggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatataatgattgtgcatgtttccgtcaactcttccactgtttgcatctttggcc 142  Q
    |||||||||||||| || ||||||||||| |||||||||||| ||||||| || ||  ||||   ||   ||||||||||    |||||||| || ||||    
T  6262242 ggatattgtccaaaattaacagctgcatgaagagctgaagcagtccatatgataatactgcaaacttgaatcaactcttcgcgagtttgcattttcggcc 6262341  T
Q  143 accaaggctcgtttttcttgtcgccgtgaccttcttgtatcaattccttccaccaagattgtagttc 209  Q
    |||| ||||||| ||||||||| || |||||  ||| ||  | ||| |||||||||||||| |||||    
T  6262342 accatggctcgtctttcttgtcaccatgacccacttctacaacttctttccaccaagattggagttc 6262408  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 6273451 - 6273500
Alignment:
Q  43 ggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 92  Q
    |||||||||||||| || ||||||||||| || |||||||||||||||||    
T  6273451 ggatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatat 6273500  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 6389882 - 6389931
Alignment:
Q  43 ggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 92  Q
    |||||||||||||| || ||||||||||| || |||||||||||||||||    
T  6389882 ggatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatat 6389931  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 6368901 - 6368949
Alignment:
Q  44 gatattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 92  Q
    ||||||||||||| || ||||||||||| || |||||||||||||||||    
T  6368901 gatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatat 6368949  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 6423160 - 6423208
Alignment:
Q  46 tattgtccaaagtttacagctgcatgtagagctgaagcaatccatataa 94  Q
    ||||||||||| || ||||||||||| || |||||||||||||||||||    
T  6423160 tattgtccaaaattaacagctgcatgaagtgctgaagcaatccatataa 6423208  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 6351240 - 6351291
Alignment:
Q  43 ggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatataa 94  Q
    ||||||||||| || || ||||||||||| || |||||||||||||||||||    
T  6351240 ggatattgtccgaaattaacagctgcatgaagtgctgaagcaatccatataa 6351291  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 92
Target Start/End: Original strand, 6456154 - 6456205
Alignment:
Q  41 aaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 92  Q
    ||||||| ||||||||||| || |||||||| |||||||||||| |||||||    
T  6456154 aaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatat 6456205  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 7457983 - 7458030
Alignment:
Q  45 atattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 92  Q
    |||||||||||| || ||||||||||| || |||||||||||||||||    
T  7457983 atattgtccaaaattaacagctgcatgaagtgctgaagcaatccatat 7458030  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 7470385 - 7470432
Alignment:
Q  45 atattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 92  Q
    |||||||||||| || ||||||||||| || |||||||||||||||||    
T  7470385 atattgtccaaaattaacagctgcatgaagtgctgaagcaatccatat 7470432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 6449687 - 6449741
Alignment:
Q  41 aaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatataat 95  Q
    ||||||||||||| || || ||||||||||| ||||| |||||| ||||||||||    
T  6449687 aaggatattgtccgaaattaacagctgcatgaagagcagaagcagtccatataat 6449741  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 6362125 - 6362174
Alignment:
Q  43 ggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 92  Q
    |||||||||||||| || || |||||||| || |||||||||||||||||    
T  6362125 ggatattgtccaaaattaactgctgcatgaagtgctgaagcaatccatat 6362174  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 6409129 - 6409177
Alignment:
Q  41 aaggatattgtccaaagtttacagctgcatgtagagctgaagcaatcca 89  Q
    |||||||||||||||| || ||||||||||| || |||||||| |||||    
T  6409129 aaggatattgtccaaaattaacagctgcatgaagtgctgaagccatcca 6409177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 9606339 - 9606278
Alignment:
Q  31 taacctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 92  Q
    |||||| || |||||||||||||||| || ||||||||||| ||||| |||||| |||||||    
T  9606339 taacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatat 9606278  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 42692174 - 42692217
Alignment:
Q  49 tgtccaaagtttacagctgcatgtagagctgaagcaatccatat 92  Q
    |||||||| || ||||||||||| ||||||||||||||||||||    
T  42692174 tgtccaaaattaacagctgcatgaagagctgaagcaatccatat 42692217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 42692254 - 42692298
Alignment:
Q  129 ttgcatctttggccaccaaggctcgtttttcttgtcgccgtgacc 173  Q
    ||||||||| |||||||| |||||||||||||| || ||||||||    
T  42692254 ttgcatcttaggccaccatggctcgtttttcttatcaccgtgacc 42692298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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