View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5720-Insertion-5 (Length: 191)

Name: NF5720-Insertion-5
Description: NF5720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5720-Insertion-5
NF5720-Insertion-5
[»] chr5 (12 HSPs)
chr5 (10-191)||(8938953-8939134)
chr5 (10-171)||(29278905-29279066)
chr5 (52-191)||(27083148-27083288)
chr5 (42-179)||(4477251-4477388)
chr5 (119-191)||(20025324-20025397)
chr5 (136-191)||(22903134-22903190)
chr5 (99-179)||(7449845-7449925)
chr5 (91-191)||(227626-227728)
chr5 (93-191)||(16621249-16621345)
chr5 (116-189)||(26994580-26994654)
chr5 (125-163)||(34493583-34493621)
chr5 (116-189)||(30827113-30827185)
[»] chr4 (11 HSPs)
chr4 (12-188)||(10981910-10982085)
chr4 (47-191)||(47253318-47253463)
chr4 (97-189)||(26894677-26894769)
chr4 (12-143)||(3982728-3982859)
chr4 (90-187)||(19809746-19809844)
chr4 (98-179)||(17121603-17121684)
chr4 (94-169)||(1724016-1724091)
chr4 (52-143)||(39194160-39194251)
chr4 (134-191)||(12683826-12683884)
chr4 (136-191)||(19643743-19643799)
chr4 (116-161)||(50151778-50151823)
[»] chr1 (12 HSPs)
chr1 (10-187)||(43344314-43344489)
chr1 (118-189)||(18246186-18246257)
chr1 (115-191)||(5671811-5671888)
chr1 (85-191)||(2612607-2612713)
chr1 (116-184)||(16030443-16030512)
chr1 (52-191)||(5459619-5459759)
chr1 (99-163)||(8019018-8019082)
chr1 (42-185)||(2140848-2140992)
chr1 (116-191)||(16050435-16050511)
chr1 (116-191)||(34273128-34273204)
chr1 (141-191)||(12177427-12177478)
chr1 (134-188)||(26977784-26977839)
[»] chr7 (12 HSPs)
chr7 (18-191)||(9573303-9573476)
chr7 (115-189)||(9135334-9135409)
chr7 (18-180)||(12004656-12004818)
chr7 (99-168)||(25173941-25174010)
chr7 (116-186)||(16203768-16203839)
chr7 (116-163)||(43172010-43172057)
chr7 (116-189)||(29373489-29373563)
chr7 (116-191)||(5863228-5863304)
chr7 (42-82)||(16203873-16203913)
chr7 (42-82)||(16204442-16204482)
chr7 (134-181)||(26762903-26762951)
chr7 (116-179)||(2226696-2226759)
[»] chr2 (14 HSPs)
chr2 (47-191)||(45715036-45715181)
chr2 (49-187)||(45258059-45258198)
chr2 (115-191)||(36267539-36267616)
chr2 (101-173)||(27933704-27933776)
chr2 (99-182)||(23257832-23257915)
chr2 (99-173)||(17672032-17672105)
chr2 (149-191)||(36022502-36022544)
chr2 (116-191)||(3586404-3586480)
chr2 (134-187)||(12169018-12169072)
chr2 (99-173)||(17626960-17627033)
chr2 (99-173)||(17658020-17658093)
chr2 (119-189)||(44941978-44942047)
chr2 (134-189)||(19919058-19919114)
chr2 (134-189)||(24499832-24499888)
[»] chr6 (22 HSPs)
chr6 (99-179)||(22692146-22692226)
chr6 (116-191)||(9291994-9292069)
chr6 (42-187)||(34572894-34573040)
chr6 (119-191)||(9277278-9277350)
chr6 (116-191)||(15480315-15480391)
chr6 (68-191)||(34187340-34187459)
chr6 (47-191)||(3404767-3404912)
chr6 (93-185)||(10926845-10926937)
chr6 (115-191)||(10115658-10115735)
chr6 (119-186)||(12203615-12203683)
chr6 (116-191)||(19305505-19305581)
chr6 (99-167)||(2393458-2393523)
chr6 (32-162)||(15104170-15104299)
chr6 (116-188)||(18147350-18147423)
chr6 (149-189)||(25008398-25008438)
chr6 (125-172)||(8006938-8006984)
chr6 (116-179)||(32721169-32721231)
chr6 (135-189)||(17703724-17703778)
chr6 (117-179)||(18567366-18567428)
chr6 (42-82)||(14268582-14268622)
chr6 (116-163)||(20148385-20148432)
chr6 (116-163)||(22184396-22184443)
[»] chr8 (11 HSPs)
chr8 (32-182)||(37709218-37709365)
chr8 (51-191)||(18322984-18323125)
chr8 (116-191)||(13754799-13754875)
chr8 (116-191)||(30477682-30477758)
chr8 (136-191)||(6928084-6928140)
chr8 (119-179)||(23963432-23963492)
chr8 (134-188)||(17698277-17698332)
chr8 (135-189)||(24507500-24507555)
chr8 (125-191)||(13765030-13765097)
chr8 (49-80)||(23497071-23497102)
chr8 (116-159)||(23497137-23497180)
[»] scaffold0012 (1 HSPs)
scaffold0012 (52-189)||(149190-149327)
[»] chr3 (11 HSPs)
chr3 (116-188)||(9801058-9801131)
chr3 (136-191)||(28715482-28715538)
chr3 (116-179)||(30429875-30429937)
chr3 (116-189)||(16704445-16704519)
chr3 (135-191)||(21342280-21342337)
chr3 (136-191)||(17143743-17143799)
chr3 (115-189)||(2311807-2311882)
chr3 (119-169)||(6129500-6129550)
chr3 (117-161)||(38944618-38944662)
chr3 (120-163)||(8122893-8122936)
chr3 (135-189)||(30606971-30607026)
[»] scaffold0360 (1 HSPs)
scaffold0360 (116-191)||(13963-14039)
[»] scaffold0034 (1 HSPs)
scaffold0034 (99-187)||(18428-18516)
[»] scaffold0023 (1 HSPs)
scaffold0023 (116-191)||(95784-95860)
[»] scaffold0291 (1 HSPs)
scaffold0291 (116-191)||(15404-15480)
[»] scaffold0505 (1 HSPs)
scaffold0505 (115-189)||(7928-8003)
[»] scaffold0002 (1 HSPs)
scaffold0002 (116-191)||(120985-121061)
[»] scaffold0054 (1 HSPs)
scaffold0054 (116-163)||(68776-68823)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 8939134 - 8938953
Alignment:
Q  10 taccacattagagcacgcctctgtgcatcatacaccgtacatgtgtcctctaaccgcaccctaatcacacgccgtatatcccggaggcagttattctcac 109  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  8939134 taccacattagagcacgcctccgtgcatcaaacaccgtacatgtgtcctctaaccgctccctaatcacacgccgcatatcccggaggcagttattctcac 8939035  T
Q  110 acaaatctatataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttttacacactctttctcagt 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8939034 acaaatctatataacggtgacttagcttcaccctcaatgtatgattcacttttcccacactttttacacactctttctcagt 8938953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 10 - 171
Target Start/End: Original strand, 29278905 - 29279066
Alignment:
Q  10 taccacattagagcacgcctctgtgcatcatacaccgtacatgtgtcctctaaccgcaccctaatcacacgccgtatatcccggaggcagttattctcac 109  Q
    ||||||| ||| ||||||||| |||||| |  || | ||||  |||||||||||||| ||||||||||||||   ||||||| ||||| ||||||||||     
T  29278905 taccacaatagggcacgcctccgtgcattaatcatcatacacatgtcctctaaccgctccctaatcacacgctccatatcccagaggcggttattctcag 29279004  T
Q  110 acaaatctatataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactt 171  Q
    |||   |||||||| ||||||||| ||| ||||||||  |||||||| |||||  |||||||    
T  29279005 acacgcctatataagggtgacttaactttaccctcaagatatgattcgctttttccacactt 29279066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 52 - 191
Target Start/End: Original strand, 27083148 - 27083288
Alignment:
Q  52 gtgtcctctaaccgcaccctaatcacacgccgtatatcccggaggcagttattctcacacaaatctatataacggtgacttagcttcaccctcaatgtat 151  Q
    |||||||||||| || | |||||||||||||| | | || |||| ||||||||||||| |    ||||  || ||||||||| |||||||||||| ||||    
T  27083148 gtgtcctctaactgctctctaatcacacgccgcaaaacctggagacagttattctcacgcgcgcctatgcaagggtgacttaacttcaccctcaaggtat 27083247  T
Q  152 gattcacttttctc-acactttttacacactctttctcagt 191  Q
    |||||||||||| | ||||||| ||||||||||||| ||||    
T  27083248 gattcacttttcacaacactttctacacactctttcacagt 27083288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 42 - 179
Target Start/End: Complemental strand, 4477388 - 4477251
Alignment:
Q  42 caccgtacatgtgtcctctaaccgcaccctaatcacacgccgtatatcccggaggcagttattctcacacaaatctatataacggtgacttagcttcacc 141  Q
    ||||||||| |||||||| ||| ||  ||||||||| ||||  || || ||| | || |||||||||||||   |||||||| |||||||||||||||||    
T  4477388 caccgtacacgtgtcctccaacggcctcctaatcacgcgccacatctcacggggacaattattctcacacatgcctatataagggtgacttagcttcacc 4477289  T
Q  142 ctcaatgtatgattcacttttctcacactttttacaca 179  Q
    | ||| ||  ||||||||| || ||||||||| |||||    
T  4477288 cccaaggtccgattcacttctcccacacttttcacaca 4477251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 20025397 - 20025324
Alignment:
Q  119 tataacggtgacttagcttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctcagt 191  Q
    ||||| |||||| ||||||||||||||| | |||||||||||| | | ||||||| ||||||||||||||||||    
T  20025397 tataagggtgacctagcttcaccctcaaggaatgattcactttacacaacactttctacacactctttctcagt 20025324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 22903190 - 22903134
Alignment:
Q  136 ttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctcagt 191  Q
    ||||||||||| |||||||||||||||| | ||||||| ||||||||||||||||||    
T  22903190 ttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcagt 22903134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 7449925 - 7449845
Alignment:
Q  99 gttattctcacacaaatctatataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttttacaca 179  Q
    ||||||||||||||    ||||||| |||||||||||||||||    |||||||||||||||||| |||| |||| |||||    
T  7449925 gttattctcacacacgcatatataagggtgacttagcttcacctctgatgtatgattcacttttcccacatttttcacaca 7449845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 91 - 191
Target Start/End: Original strand, 227626 - 227728
Alignment:
Q  91 cggaggcagttattctcacacaaatctatataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttt--tacacactctttctc 188  Q
    ||||||| ||||||||||||||   |||||||| |||||  ||||||| |||  || |||||||||| |||||  ||||||||  || ||||||||||||    
T  227626 cggaggcggttattctcacacacggctatataagggtgagatagcttctcccctaaagtatgattcatttttcctacactttttatatacactctttctc 227725  T
Q  189 agt 191  Q
    |||    
T  227726 agt 227728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 16621345 - 16621249
Alignment:
Q  93 gaggcagttattctcacacaaatctatataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttttacacactctttctcagt 191  Q
    |||||||||| ||||||||| |  |||||||  ||||  || |||||||| ||| |||||||||||||||  |||| ||||  ||||||||||||||||    
T  16621345 gaggcagttactctcacacacacttatataagagtgagataacttcacccccaaggtatgattcactttttccacaatttt--cacactctttctcagt 16621249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 26994580 - 26994654
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctca 189  Q
    |||||||| |||||| | ||||||||| ||| |||||||||||||||| | |||| || || |||||||||||||    
T  26994580 ctatataagggtgaccttgcttcacccccaaggtatgattcacttttcacaacaccttctaaacactctttctca 26994654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 34493621 - 34493583
Alignment:
Q  125 ggtgacttagcttcaccctcaatgtatgattcacttttc 163  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  34493621 ggtgacttagtttcaccctcaaggtatgattcacttttc 34493583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 30827185 - 30827113
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttttacacactctttctca 189  Q
    |||||||| ||  |||||||||||||| ||| ||||||||||||||||  |||||| ||||||| ||| |||||    
T  30827185 ctatataagggcaacttagcttcaccc-caaggtatgattcacttttcctacacttattacacattctatctca 30827113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 10982085 - 10981910
Alignment:
Q  12 ccacattagagcacgcctctgtgcatcatacaccgtacatgtgtcctctaaccgcaccctaatcacacgccgtatatcccggaggcagttattctcacac 111  Q
    ||||||||||||||||||  |||| |||  |||| |||||||||||||||||||| ||||||||||| |||| ||||||||||||| |||||||||||||    
T  10982085 ccacattagagcacgccttcgtgcgtcaatcaccatacatgtgtcctctaaccgctccctaatcacaagccgcatatcccggaggcggttattctcacac 10981986  T
Q  112 aaatctatataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttttacacactctttctc 188  Q
    |  ||||||||| |||||||||| ||| ||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  10981985 acgtctatataagggtgacttagtttctccc-caatgtatgattcacttttcccacactttttacacactctttctc 10981910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 47 - 191
Target Start/End: Complemental strand, 47253463 - 47253318
Alignment:
Q  47 tacatgtgtcctctaaccgcaccctaatcacacgccgtatatcccggaggcagttattctcacacaaatctatataacggtgacttagcttcaccctcaa 146  Q
    ||||||||||||||||  || | |||||||||| ||| | | ||||||| |||||||| |||  |    |||||||| ||||||||||||||||||||||    
T  47253463 tacatgtgtcctctaattgctctctaatcacacaccgcaaaacccggagacagttattatcatgcgcgcctatataagggtgacttagcttcaccctcaa 47253364  T
Q  147 tgtatgattcacttttctc-acactttttacacactctttctcagt 191  Q
     |||||||||||||||| | ||||||||||||||||||||||||||    
T  47253363 ggtatgattcacttttcacaacactttttacacactctttctcagt 47253318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 189
Target Start/End: Original strand, 26894677 - 26894769
Alignment:
Q  97 cagttattctcacacaaatctatataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttttacacactctttctca 189  Q
    ||||||||||||||||   ||||||||  ||||| |  ||| |||||||| ||| |||||||||||||||||||||||| |||||| ||||||    
T  26894677 cagttattctcacacacgcctatataagtgtgacatttcttaaccctcaaggtacgattcacttttctcacactttttaaacactccttctca 26894769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 12 - 143
Target Start/End: Complemental strand, 3982859 - 3982728
Alignment:
Q  12 ccacattagagcacgcctctgtgcatcatacaccgtacatgtgtcctctaaccgcaccctaatcacacgccgtatatcccggaggcagttattctcacac 111  Q
    ||||||||||| || ||||| | |||||  |||| |||| | ||||||||| | | |||||||||||||| | |||||  |||||| ||||||| |||||    
T  3982859 ccacattagagtacacctctatacatcaatcaccatacacgcgtcctctaatcactccctaatcacacgctgcatatcttggaggcggttattcccacac 3982760  T
Q  112 aaatctatataacggtgacttagcttcaccct 143  Q
    |   ||||| || |||||||||||||||||||    
T  3982759 acgcctatagaagggtgacttagcttcaccct 3982728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 187
Target Start/End: Complemental strand, 19809844 - 19809746
Alignment:
Q  90 ccggaggcagttattctcacacaaatctatataacggtgacttagcttcaccctcaatgtatgattcacttttctc-acactttttacacactctttct 187  Q
    |||||| ||||||||||||| |    |||| ||| |||||||||| ||||||||||| |||| ||||||||||| | ||||||| ||||||||||||||    
T  19809844 ccggagacagttattctcacgcgcgcctatgtaagggtgacttagtttcaccctcaaggtataattcacttttcacaacactttctacacactctttct 19809746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 17121603 - 17121684
Alignment:
Q  98 agttattctcacacaaatctatataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttttacaca 179  Q
    |||||||| ||||||  ||||||||| ||||| ||| |||||||| ||| |||| ||||||||||| ||||||||| |||||    
T  17121603 agttattcacacacacgtctatataagggtgatttaacttcacccccaaggtattattcacttttcccacacttttcacaca 17121684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 169
Target Start/End: Complemental strand, 1724091 - 1724016
Alignment:
Q  94 aggcagttattctcacacaaatctatataacggtgacttagcttcaccctcaatgtatgattcacttttctcacac 169  Q
    |||| ||| |||||||||| | |||||||| ||||| ||||||||| |  ||| ||||||||||||||||||||||    
T  1724091 aggcggttgttctcacacacacctatataatggtgatttagcttcatctccaaggtatgattcacttttctcacac 1724016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 39194251 - 39194160
Alignment:
Q  52 gtgtcctctaaccgcaccctaatcacacgccgtatatcccggaggcagttattctcacacaaatctatataacggtgacttagcttcaccct 143  Q
    ||||||||||||||| |||||||||||||||  ||||  ||||| | |||||||||||    | |||||||| |||||||||| ||||||||    
T  39194251 gtgtcctctaaccgctccctaatcacacgccacatatttcggagacggttattctcacgtgcacctatataagggtgacttagtttcaccct 39194160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 12683884 - 12683826
Alignment:
Q  134 gcttcaccctcaatgtatgattcacttttctca-cactttttacacactctttctcagt 191  Q
    |||||||||| || |||||||||||||||| || |||||| ||||||||||||||||||    
T  12683884 gcttcacccttaaggtatgattcacttttcacaacactttctacacactctttctcagt 12683826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 19643799 - 19643743
Alignment:
Q  136 ttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctcagt 191  Q
    ||||||||||| |||||||||||||||| | | ||||| ||||||||||||||||||    
T  19643799 ttcaccctcaaggtatgattcacttttcacaagactttctacacactctttctcagt 19643743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 50151778 - 50151823
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttt 161  Q
    |||||||| |||||||| ||||||||||||| |||||||| |||||    
T  50151778 ctatataagggtgactttgcttcaccctcaaggtatgatttacttt 50151823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 2e-32; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 10 - 187
Target Start/End: Original strand, 43344314 - 43344489
Alignment:
Q  10 taccacattagagcacgcctctgtgcatcatacaccgtacatgtgtcctctaaccgcaccctaatcacacgccgtatatcccggaggcagttattctcac 109  Q
    |||| ||||||||||| |||  |||||||| | |||||||| |||| ||||||||||| |||| |||||||||| || ||   |||||||||||||||||    
T  43344314 taccccattagagcacaccttcgtgcatcagataccgtacacgtgttctctaaccgcatcctagtcacacgccgcatctcgtagaggcagttattctcac 43344413  T
Q  110 acaaatctatataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttttacacactctttct 187  Q
    |||    ||||||| ||||| ||| |||||||  |||||||||||||||||||| | |||||||||||||||||||||    
T  43344414 acattcttatataagggtgagttaacttcacc--caatgtatgattcacttttcccccactttttacacactctttct 43344489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 118 - 189
Target Start/End: Complemental strand, 18246257 - 18246186
Alignment:
Q  118 atataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttttacacactctttctca 189  Q
    |||||| ||||||||| |||||||||||| |||||| ||||||||||||||||||||| |||||||||||||    
T  18246257 atataagggtgacttatcttcaccctcaaggtatgaatcacttttctcacactttttatacactctttctca 18246186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 5671888 - 5671811
Alignment:
Q  115 tctatataacggtgacttagcttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctcagt 191  Q
    |||||||||  |||||||| ||||||| ||||||||||||||||||||| | ||||||| ||||||||||||||||||    
T  5671888 tctatataagagtgacttaacttcaccttcaatgtatgattcacttttcacaacactttctacacactctttctcagt 5671811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 191
Target Start/End: Original strand, 2612607 - 2612713
Alignment:
Q  85 atatcccggaggcagttattctcacacaaatctatataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttttacacactctt 184  Q
    ||||| ||||||||  |||||| |||||  ||||||||| ||||| ||||||||| |||||| |||||||||| ||||  | || |||||||||||||||    
T  2612607 atatcacggaggcatatattcttacacacgtctatataagggtgagttagcttcatcctcaaggtatgattcattttttccgcattttttacacactctt 2612706  T
Q  185 tctcagt 191  Q
     ||||||    
T  2612707 cctcagt 2612713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 16030512 - 16030443
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttctc-acactttttacacactctt 184  Q
    |||||||| |||| ||||||||| ||||||| |||||||||||||||| | ||||||| |||||||||||    
T  16030512 ctatataagggtggcttagcttcgccctcaaggtatgattcacttttcacaacactttctacacactctt 16030443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 52 - 191
Target Start/End: Original strand, 5459619 - 5459759
Alignment:
Q  52 gtgtcctctaaccgcaccctaatcacacgccgtatatcccggaggcagttattctcacacaaatctatataacggtgacttagcttcaccctcaatgtat 151  Q
    ||||||| |||| || |||||||||||||||| | | | ||| | | ||||||||||| |   ||||| | | | ||||||| ||||| || ||||||||    
T  5459619 gtgtcctttaactgctccctaatcacacgccgcaaaacacggtgacggttattctcacgcgcgtctatgttaggctgacttaacttcatccccaatgtat 5459718  T
Q  152 gattcacttttctc-acactttttacacactctttctcagt 191  Q
    |||||||||| | | ||||||| ||||||||||||||||||    
T  5459719 gattcactttacacaacactttctacacactctttctcagt 5459759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 8019082 - 8019018
Alignment:
Q  99 gttattctcacacaaatctatataacggtgacttagcttcaccctcaatgtatgattcacttttc 163  Q
    ||||||||||||||   |||||||| |||||| ||||||||||| ||| ||||||||||||||||    
T  8019082 gttattctcacacacgcctatataagggtgacatagcttcacccccaaggtatgattcacttttc 8019018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 185
Target Start/End: Original strand, 2140848 - 2140992
Alignment:
Q  42 caccgtacatgtgtcctctaaccgcaccctaatcacacgccgtatatcccggaggcagttattctcacacaaatctatataacggtgacttagcttcacc 141  Q
    |||| |||| ||||||||||||||   ||||||||||| ||  | | |||| | |  ||||||||||| |   ||| ||||| |||||||||||||||||    
T  2140848 caccatacacgtgtcctctaaccgtttcctaatcacacaccacaaaacccgaaagtggttattctcacgcgcgtctttataagggtgacttagcttcacc 2140947  T
Q  142 ctcaatgtatgattcacttttctc-acactttttacacactcttt 185  Q
    ||||| ||||| |||||||| | | ||||||| |||||| |||||    
T  2140948 ctcaaggtatggttcactttccacaacactttctacacattcttt 2140992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 16050511 - 16050435
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctcagt 191  Q
    |||||||| |||| | | |||||| |||||| ||||| |||||||||| | ||||||| ||||||||||||||||||    
T  16050511 ctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagt 16050435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 34273204 - 34273128
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttctca-cactttttacacactctttctcagt 191  Q
    |||||||| || ||| | ||||||||||||| |||||| ||||||| | || |||||| ||||||||||||||||||    
T  34273204 ctatataagggcgacattgcttcaccctcaaggtatgagtcactttacacaacactttctacacactctttctcagt 34273128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 12177478 - 12177427
Alignment:
Q  141 cctcaatgtatgattcacttttctca-cactttttacacactctttctcagt 191  Q
    |||||| |||| ||||||||||| || |||||| ||||||||||||||||||    
T  12177478 cctcaaggtataattcacttttcacaacactttctacacactctttctcagt 12177427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 26977839 - 26977784
Alignment:
Q  134 gcttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctc 188  Q
    ||||||||||||| |||||||||| ||||| | | ||||| |||||||||||||||    
T  26977839 gcttcaccctcaaggtatgattcatttttcacaatactttctacacactctttctc 26977784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 5e-27; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 9573303 - 9573476
Alignment:
Q  18 tagagcacgcctctgtgcatcatacaccgtacatgtgtcctctaaccgcaccctaatcacacgccgtatatcccggaggcagttattctcacacaaatct 117  Q
    ||||||| ||||| ||||||||  |||| || | |||||||||||||||  |||||||||| |||| || || || |   ||||||||| |||||   ||    
T  9573303 tagagcatgcctccgtgcatcaagcaccatataggtgtcctctaaccgcctcctaatcacatgccgcatctcacgaaaatagttattcttacacattcct 9573402  T
Q  118 atataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttttacacactctttctcagt 191  Q
    |||||| |||||||||||||||||  ||||||||||||||  |||| ||||||| |||||||||||||||||||    
T  9573403 atataagggtgacttagcttcacctccaatgtatgattcatgtttcccacacttcttacacactctttctcagt 9573476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 9135334 - 9135409
Alignment:
Q  115 tctatataacggtgacttagcttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctca 189  Q
    ||||||||| ||||| || ||||||||||||| |||||||||||||||| | ||| ||||||||||||||||||||    
T  9135334 tctatataagggtgaatttgcttcaccctcaaggtatgattcacttttcacaacagtttttacacactctttctca 9135409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 12004656 - 12004818
Alignment:
Q  18 tagagcacgcctctgtgcatcatacaccgtacatgtgtcctctaaccgcaccctaatcacacgccgtatatcccggaggcagttattctcacacaaatct 117  Q
    |||||| ||| ||||||||||| ||||| | || || | || ||||||   ||||||||| | ||| | ||  |||| |||||||||||||||||   ||    
T  12004656 tagagcgcgcttctgtgcatcagacaccatgcacgtattctttaaccgtctcctaatcacgctccgcaaattacggaagcagttattctcacacacgcct 12004755  T
Q  118 atataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttttacacac 180  Q
    |||||| |||||||||||||||||   || | |||||| ||||||| ||||||||||||||||    
T  12004756 atataagggtgacttagcttcacctcaaagggatgattgacttttcccacactttttacacac 12004818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 25174010 - 25173941
Alignment:
Q  99 gttattctcacacaaatctatataacggtgacttagcttcaccctcaatgtatgattcacttttctcaca 168  Q
    ||||||||||||||  ||||||||| ||| |||||  ||| ||||||||||||||| |||||||| ||||    
T  25174010 gttattctcacacacgtctatataagggttacttaaattctccctcaatgtatgatccacttttcccaca 25173941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 16203839 - 16203768
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttc-tcacactttttacacactctttc 186  Q
    |||||||| ||||||||  ||||||||| || ||||| |||||||||| | ||||||| |||||||||||||    
T  16203839 ctatataagggtgacttttcttcacccttaaggtatggttcacttttcataacactttatacacactctttc 16203768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 43172010 - 43172057
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttc 163  Q
    |||||||| |||||  | ||||||||||||||||||||||||||||||    
T  43172010 ctatataagggtgaagttgcttcaccctcaatgtatgattcacttttc 43172057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 29373563 - 29373489
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctca 189  Q
    |||||| | |||||| | ||||||||||||| |||||||||| ||||| | ||| ||| ||||||||||||||||    
T  29373563 ctatatgagggtgacattgcttcaccctcaaggtatgattcaattttcacaacattttctacacactctttctca 29373489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 5863304 - 5863228
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctcagt 191  Q
    ||||| || |||||| | ||| ||||||||| |||||||||||||||  | ||| ||| ||||||||||||||||||    
T  5863304 ctatacaagggtgacattgctccaccctcaaggtatgattcactttttacaacattttctacacactctttctcagt 5863228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 16203913 - 16203873
Alignment:
Q  42 caccgtacatgtgtcctctaaccgcaccctaatcacacgcc 82  Q
    |||| |||| ||||||||||||||| |||||||||||||||    
T  16203913 caccctacacgtgtcctctaaccgctccctaatcacacgcc 16203873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 16204482 - 16204442
Alignment:
Q  42 caccgtacatgtgtcctctaaccgcaccctaatcacacgcc 82  Q
    |||| |||| ||||||||||||||| |||||||||||||||    
T  16204482 caccctacacgtgtcctctaaccgctccctaatcacacgcc 16204442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 181
Target Start/End: Original strand, 26762903 - 26762951
Alignment:
Q  134 gcttcaccctcaatgtatgattcacttttctc-acactttttacacact 181  Q
    ||||||||||||| |||||||||||||||| | ||||||| ||||||||    
T  26762903 gcttcaccctcaaggtatgattcacttttcacaacactttctacacact 26762951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 2226759 - 2226696
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttttacaca 179  Q
    |||||||| |||||||||||||||| | |||  || ||||||||| || ||||||||| |||||    
T  2226759 ctatataaaggtgacttagcttcactcccaagatacgattcacttctcccacacttttcacaca 2226696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 47 - 191
Target Start/End: Complemental strand, 45715181 - 45715036
Alignment:
Q  47 tacatgtgtcctctaaccgcaccctaatcacacgccgtatatcccggaggcagttattctcacacaaatctatataacggtgacttagcttcaccctcaa 146  Q
    ||||||||||||||||| || | |||||||||||||  ||||| | ||| ||||||||||||| |     |||| || ||||||||||||||||| ||||    
T  45715181 tacatgtgtcctctaactgctctctaatcacacgccacatatctcagagacagttattctcacgcgtgcttatacaagggtgacttagcttcaccttcaa 45715082  T
Q  147 tgtatgattcacttttctc-acactttttacacactctttctcagt 191  Q
     |||||||||| ||||| | ||||||||||||||||||||||||||    
T  45715081 ggtatgattcaattttcaccacactttttacacactctttctcagt 45715036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 187
Target Start/End: Original strand, 45258059 - 45258198
Alignment:
Q  49 catgtgtcctctaaccgcaccctaatcacacgccgtatatcccggaggcagttattctcacacaaatctatataacggtgacttagcttcaccctcaatg 148  Q
    |||||||||||||||||| |||||||||||||||| | | | ||||| | |||||  ||||    | |||||||| |||||||| ||||||||||||| |    
T  45258059 catgtgtcctctaaccgctccctaatcacacgccgcaaaactcggagacggttatcgtcacgaggacctatataagggtgactttgcttcaccctcaagg 45258158  T
Q  149 tatgattcacttttctc-acactttttacacactctttct 187  Q
    ||||||||||||||| | |||||||  ||||| |||||||    
T  45258159 tatgattcacttttcacaacactttcgacacattctttct 45258198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 36267616 - 36267539
Alignment:
Q  115 tctatataacggtgacttagcttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctcagt 191  Q
    ||||||||| |||||  | ||||||||||||| |||||||||||||||| | || |||| ||||||||||||||||||    
T  36267616 tctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactctttctcagt 36267539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 27933704 - 27933776
Alignment:
Q  101 tattctcacacaaatctatataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttt 173  Q
    ||||||||||||  ||||||||| ||| ||||| |||||||  ||| |||||||||||||||| |||||||||    
T  27933704 tattctcacacacgtctatataaaggtaacttaacttcacctccaaggtatgattcacttttcccacactttt 27933776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 23257915 - 23257832
Alignment:
Q  99 gttattctcacacaaatctatataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttttacacactc 182  Q
    ||||||||||||||   |||||||| |||||| | | ||||||||||| |||  ||||||||||| |||||||| |||||||||    
T  23257915 gttattctcacacacgcctatataagggtgaccttgattcaccctcaaggtacaattcacttttcccacactttctacacactc 23257832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 17672105 - 17672032
Alignment:
Q  99 gttattctcacacaaatctatataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttt 173  Q
    |||||||||| |||   |||| ||| |||||||||||||||||| ||| |||||||||||||||| |||||||||    
T  17672105 gttattctcatacacgcctatttaagggtgacttagcttcaccc-caaggtatgattcacttttcccacactttt 17672032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 36022544 - 36022502
Alignment:
Q  149 tatgattcacttttctcacactttttacacactctttctcagt 191  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  36022544 tatgattcactttgctcacactttttacaaactctttctcagt 36022502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 3586480 - 3586404
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctcagt 191  Q
    |||||||| |||||  | ||||||||||||| |||||||||||||||| | ||||||| ||| |||| |||||||||    
T  3586480 ctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactttctactcactttttctcagt 3586404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 12169072 - 12169018
Alignment:
Q  134 gcttcaccctcaatgtatgattcacttttctc-acactttttacacactctttct 187  Q
    ||||||||||||| |||| ||||||||||| | ||||||| ||||||||||||||    
T  12169072 gcttcaccctcaaggtataattcacttttcacaacactttctacacactctttct 12169018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 17627033 - 17626960
Alignment:
Q  99 gttattctcacacaaatctatataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttt 173  Q
    |||||||||| |||   |||| ||| |||||||||||||||||| ||| |||||||||||||||  |||||||||    
T  17627033 gttattctcatacacgcctatttaagggtgacttagcttcaccc-caaggtatgattcactttttccacactttt 17626960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 17658093 - 17658020
Alignment:
Q  99 gttattctcacacaaatctatataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttt 173  Q
    |||||||||| |||   |||| ||| |||||||||||||||||| ||| |||||||||||||||| | |||||||    
T  17658093 gttattctcatacacgcctatttaagggtgacttagcttcaccc-caaggtatgattcacttttcccgcactttt 17658020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 44942047 - 44941978
Alignment:
Q  119 tataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttttacacactctttctca 189  Q
    ||||| |||||||||||||||||| ||| ||||||||| ||||||  |||||| |||| ||||| ||||||    
T  44942047 tataagggtgacttagcttcaccc-caaagtatgattcgcttttcctacacttgttacgcactccttctca 44941978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 19919058 - 19919114
Alignment:
Q  134 gcttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctca 189  Q
    |||||| |||||| |||||||||||||||| | ||||||| |||| |||||||||||    
T  19919058 gcttcatcctcaaggtatgattcacttttcacaacactttctacatactctttctca 19919114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 24499888 - 24499832
Alignment:
Q  134 gcttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctca 189  Q
    |||||||||| || |||||||||||||||| | ||| ||| ||||||||||||||||    
T  24499888 gcttcacccttaaggtatgattcacttttcacaacattttctacacactctttctca 24499832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 22692226 - 22692146
Alignment:
Q  99 gttattctcacacaaatctatataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttttacaca 179  Q
    |||||||||||||| | |||||||| ||||||||||||||||||||||  ||||||||||||||| ||||||||| |||||    
T  22692226 gttattctcacacacacctatataaaggtgacttagcttcaccctcaagttatgattcacttttcccacacttttcacaca 22692146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 9291994 - 9292069
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttttacacactctttctcagt 191  Q
    |||||||| ||||| |||||||||||||||| |||||||||||||||| ||||||||||||| ||| |||||||||    
T  9291994 ctatataaaggtgagttagcttcaccctcaaggtatgattcacttttcccacactttttacatactatttctcagt 9292069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 187
Target Start/End: Original strand, 34572894 - 34573040
Alignment:
Q  42 caccgtacatgtgtcctctaaccgcaccctaatcacacgccgtatatcccggaggcagttattctcacacaaatctatataacggtgacttagcttcacc 141  Q
    |||| |||| ||||||||||| | | ||||||||||||| || |||||  ||||    ||||||||||||    |||||||| ||||||||| |||||||    
T  34572894 caccctacacgtgtcctctaatcactccctaatcacacgtcgcatatcatggagatgattattctcacacgcgcctatataagggtgacttaacttcacc 34572993  T
Q  142 ctcaatgtatgattcacttttc-tcacactttttacacactctttct 187  Q
    ||||||||||||||||||||||  |||||||| |||||||| |||||    
T  34572994 ctcaatgtatgattcacttttcaccacactttctacacactttttct 34573040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 9277278 - 9277350
Alignment:
Q  119 tataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttttacacactctttctcagt 191  Q
    ||||| ||||| |||||||||||||||| ||||||||||||||   ||||||||||||| |||||||||||||    
T  9277278 tataagggtgagttagcttcaccctcaaggtatgattcactttctccacactttttacatactctttctcagt 9277350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 15480315 - 15480391
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctcagt 191  Q
    |||||||| |||||||||||||||| ||||| |||||||||||||||| | ||||||| |||||||| |||||||||    
T  15480315 ctatataagggtgacttagcttcactctcaaggtatgattcacttttcacaacactttctacacactttttctcagt 15480391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 191
Target Start/End: Complemental strand, 34187459 - 34187340
Alignment:
Q  68 ccctaatcacacgccgtatatcccggaggcagttattctcacacaaatctatataacggtgacttagcttcaccctcaatgtatgattcacttttctcac 167  Q
    |||||||||||||| | ||||||||||| | |||||||||||  |   |||||||| |||||    ||||||||||||| |||  |||||||||   |||    
T  34187459 ccctaatcacacgctgcatatcccggagacggttattctcacgtatgcctatataagggtga----gcttcaccctcaaggtacaattcactttcaccac 34187364  T
Q  168 actttttacacactctttctcagt 191  Q
    ||||||||||||||||||||||||    
T  34187363 actttttacacactctttctcagt 34187340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 47 - 191
Target Start/End: Original strand, 3404767 - 3404912
Alignment:
Q  47 tacatgtgtcctctaaccgcaccctaatcacacgccgtatatcccggaggcagttattctcacacaaatctatataacggtgacttagcttcaccctcaa 146  Q
    |||| ||||||||||||| | || ||||||||||| | | | ||| ||| | |||||| ||||||    |||||||| ||| | ||| ||||||||||||    
T  3404767 tacacgtgtcctctaaccactccttaatcacacgctgcaaaacccagagacggttattttcacacgcgcctatataagggtaatttaacttcaccctcaa 3404866  T
Q  147 tgtatgattcacttttctc-acactttttacacactctttctcagt 191  Q
     |||||||||| ||||| | ||||||| ||||||||||||||||||    
T  3404867 ggtatgattcatttttcacaacactttctacacactctttctcagt 3404912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 185
Target Start/End: Original strand, 10926845 - 10926937
Alignment:
Q  93 gaggcagttattctcacacaaatctatataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttttacacactcttt 185  Q
    ||||||||||||||||| || | |||||||| ||  | |||||||||||| |||  ||| ||||||||||| |||||||||||| ||||||||    
T  10926845 gaggcagttattctcacccacacctatataagggcaagttagcttcacccccaagatataattcacttttcccacactttttacgcactcttt 10926937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 10115658 - 10115735
Alignment:
Q  115 tctatataacggtgacttagcttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctcagt 191  Q
    ||||||||| | |||||||||||||||||| | |||||||||||||||| | | ||||||||| | ||||||||||||    
T  10115658 tctatataaggctgacttagcttcaccctcgaggtatgattcacttttcacaaaactttttactcgctctttctcagt 10115735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 12203615 - 12203683
Alignment:
Q  119 tataacggtgacttagcttcaccctcaatgtatgattcacttttctc-acactttttacacactctttc 186  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||| | ||||||| |||| ||||||||    
T  12203615 tataagggtgacttaacttcaccctcaaagtatgattcacttttcacaacactttctacatactctttc 12203683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 19305581 - 19305505
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctcagt 191  Q
    |||| ||| |||||| | ||||||||||||| |||||||||||||||| | ||||||| ||||||||||| ||||||    
T  19305581 ctatttaagggtgaccttgcttcaccctcaaggtatgattcacttttcacaacactttctacacactcttactcagt 19305505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 2393458 - 2393523
Alignment:
Q  99 gttattctcacacaaatctatataacggtgacttagcttcaccctcaatgtatgattcacttttctcac 167  Q
    |||||||| |||||   |||||||| |||||||||||   |||||||||||||||||||||||||||||    
T  2393458 gttattcttacacacgcctatataagggtgacttagc---accctcaatgtatgattcacttttctcac 2393523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 32 - 162
Target Start/End: Original strand, 15104170 - 15104299
Alignment:
Q  32 gtgcatcatacaccgtacatgtgtcctctaaccgcaccctaatcacacgccgtatatcccggaggcagttattctcacacaaatctatataacggtgact 131  Q
    |||||||| ||||| ||||||||||||||| |||   |||||||| ||  || || || | || |  ||||||||||||||   |||||||| |||| ||    
T  15104170 gtgcatcagacaccatacatgtgtcctctagccgtctcctaatcagacatcgcatctcgcagaagaggttattctcacacacgcctatataagggtggct 15104269  T
Q  132 tagcttcaccctcaatgtatgattcactttt 162  Q
    ||||||||||| ||| |||||||||||||||    
T  15104270 tagcttcaccc-caaagtatgattcactttt 15104299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 18147423 - 18147350
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttctca-cactttttacacactctttctc 188  Q
    |||||||| |||||| | |||||||||| || |||||| ||||||||| || |||||| |||||||||||||||    
T  18147423 ctatataagggtgacattgcttcaccctaaaggtatgagtcacttttcacaacactttctacacactctttctc 18147350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 25008398 - 25008438
Alignment:
Q  149 tatgattcacttttctcacactttttacacactctttctca 189  Q
    ||||||||||||| | |||||||||||||||||||||||||    
T  25008398 tatgattcactttacccacactttttacacactctttctca 25008438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 8006938 - 8006984
Alignment:
Q  125 ggtgacttagcttcaccctcaatgtatgattcacttttctcacacttt 172  Q
    |||||||||||||||||| ||||||||||||| |||||| ||||||||    
T  8006938 ggtgacttagcttcacccccaatgtatgattc-cttttcccacacttt 8006984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 32721169 - 32721231
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttttacaca 179  Q
    |||||||| ||||| ||||||||| || ||| |||| ||||||||||| |||||||||||||||    
T  32721169 ctatataagggtgatttagcttcatcc-caaggtataattcacttttcccacactttttacaca 32721231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 17703724 - 17703778
Alignment:
Q  135 cttcaccctcaatgtatgattcacttttctcacactttttacacactctttctca 189  Q
    ||||||||  || ||| ||||||||||||||| ||||||||||||||| ||||||    
T  17703724 cttcacccgtaaggtacgattcacttttctcatactttttacacactccttctca 17703778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 18567366 - 18567428
Alignment:
Q  117 tatataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttttacaca 179  Q
    ||||||| ||||||||| |||||||| ||| ||  |||||||||||| ||||||||| |||||    
T  18567366 tatataagggtgacttaacttcacccccaaggttagattcacttttcccacacttttcacaca 18567428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 14268622 - 14268582
Alignment:
Q  42 caccgtacatgtgtcctctaaccgcaccctaatcacacgcc 82  Q
    |||| |||| ||||||||||||||| |||||||||||||||    
T  14268622 caccttacacgtgtcctctaaccgctccctaatcacacgcc 14268582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 20148432 - 20148385
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttc 163  Q
    |||||||| |||||| | |||||||| |||| ||||||||||||||||    
T  20148432 ctatataagggtgaccttgcttcaccatcaaggtatgattcacttttc 20148385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 22184396 - 22184443
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttc 163  Q
    |||||||| |||||| | |||||||| |||| ||||||||||||||||    
T  22184396 ctatataagggtgaccttgcttcaccatcaaggtatgattcacttttc 22184443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 32 - 182
Target Start/End: Original strand, 37709218 - 37709365
Alignment:
Q  32 gtgcatcatacaccgtacatgtgtcctctaaccgcaccctaatcacacgccgtatatcccggaggcagttattctcacacaaatctatataacggtgact 131  Q
    |||||||| ||||| ||||||||||||||||||||  ||||||||  ||||  || || || | || |||||||||||| | ||| |||||| |||||||    
T  37709218 gtgcatcagacaccatacatgtgtcctctaaccgcctcctaatcatgcgccacatctcacgaaagcggttattctcacatacatccatataaaggtgact 37709317  T
Q  132 tagcttcaccctcaatgtatgattcacttttctcacactttttacacactc 182  Q
    || ||||| | |||  | |||||||||||||| ||||||||||||||||||    
T  37709318 taacttca-cttca--ggatgattcacttttcccacactttttacacactc 37709365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 191
Target Start/End: Complemental strand, 18323125 - 18322984
Alignment:
Q  51 tgtgtcctctaaccgcaccctaatcacacgccgtatatcccggaggcagttattctca-cacaaatctatataacggtgacttagcttcaccctcaatgt 149  Q
    ||||||||||||||   ||||||||||||||||   | |||||||||||||||||||| | |    |||||||| |||||| | |||||| |||||||||    
T  18323125 tgtgtcctctaaccat-ccctaatcacacgccgcgaaacccggaggcagttattctcaactcttgcctatataagggtgaccttgcttcatcctcaatgt 18323027  T
Q  150 atgattcacttttctc-acactttttacacactctttctcagt 191  Q
    |||||||||||||| | ||| ||| |||||| |||||||||||    
T  18323026 atgattcacttttcacaacattttctacacaatctttctcagt 18322984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 13754875 - 13754799
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctcagt 191  Q
    ||||||||  ||||||||||||||||||||| ||| |||||||||| | | ||||||| ||||||||||||||||||    
T  13754875 ctatataagagtgacttagcttcaccctcaaggtaggattcactttacacaacactttctacacactctttctcagt 13754799  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 30477758 - 30477682
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctcagt 191  Q
    |||||||| |||||| |  |||||||||||| |||||||||||||||| | ||||||| ||||||||||||||||||    
T  30477758 ctatataagggtgacattacttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcagt 30477682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 6928084 - 6928140
Alignment:
Q  136 ttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctcagt 191  Q
    ||||||||||| |||||||||||||||| | ||||||| ||||||||||||||||||    
T  6928084 ttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcagt 6928140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 23963432 - 23963492
Alignment:
Q  119 tataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttttacaca 179  Q
    ||||| |||||||||||||||||| ||| |||||||||||||||| |||| |||| |||||    
T  23963432 tataagggtgacttagcttcacccccaacgtatgattcacttttcccacatttttcacaca 23963492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 17698277 - 17698332
Alignment:
Q  134 gcttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctc 188  Q
    ||||||||||||| |||| ||||||||||| | ||||||| |||||||||||||||    
T  17698277 gcttcaccctcaaagtataattcacttttcacaacactttctacacactctttctc 17698332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 24507555 - 24507500
Alignment:
Q  135 cttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctca 189  Q
    |||||||||||| |||||||||||||||| | ||||||| || |||||||||||||    
T  24507555 cttcaccctcaaggtatgattcacttttcacaacactttctagacactctttctca 24507500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 13765097 - 13765030
Alignment:
Q  125 ggtgacttagcttcaccctcaatgtatgattcacttttctca-cactttttacacactctttctcagt 191  Q
    ||||||||||||||||| ||||   || ||||||||| | || |||||| ||||||||||||||||||    
T  13765097 ggtgacttagcttcaccttcaagacattattcactttacacaacactttctacacactctttctcagt 13765030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 49 - 80
Target Start/End: Original strand, 23497071 - 23497102
Alignment:
Q  49 catgtgtcctctaaccgcaccctaatcacacg 80  Q
    |||||||||||||||||| |||||||||||||    
T  23497071 catgtgtcctctaaccgctccctaatcacacg 23497102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 116 - 159
Target Start/End: Original strand, 23497137 - 23497180
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcact 159  Q
    |||||||| |||||||| |||| |||||||| ||||||||||||    
T  23497137 ctatataagggtgactttgcttaaccctcaaggtatgattcact 23497180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 42; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 52 - 189
Target Start/End: Complemental strand, 149327 - 149190
Alignment:
Q  52 gtgtcctctaaccgcaccctaatcacacgccgtatatcccggaggcagttattctcacacaaatctatataacggtgacttagcttcaccctcaatgtat 151  Q
    |||||||||| ||||  ||||||||  | ||| || || |||| || ||||||||  |||| | |||||||| ||||||||| |||||||| ||| ||||    
T  149327 gtgtcctctacccgcgtcctaatcatgctccgcatctcacggaagcggttattctagcacacacctatataagggtgacttaacttcacccccaaggtat 149228  T
Q  152 gattcacttttctcacactttttacacactctttctca 189  Q
    |||||||||||  || | ||||||||||||| ||||||    
T  149227 gattcactttttccatattttttacacactccttctca 149190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000004; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 9801058 - 9801131
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctc 188  Q
    |||||||| |||||| | ||||||||||||| |||||||||||||||| | ||||||| |||||||||||||||    
T  9801058 ctatataagggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctc 9801131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 28715482 - 28715538
Alignment:
Q  136 ttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctcagt 191  Q
    ||||||||||| |||||||||||||||| | ||||||| ||||||||||||||||||    
T  28715482 ttcaccctcaaggtatgattcacttttcacaacactttatacacactctttctcagt 28715538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 30429875 - 30429937
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttttacaca 179  Q
    ||||||||  |||||||||||||||||| || ||||||||||| |||| |||||||||||||||    
T  30429875 ctatataagagtgacttagcttcacccttaaagtatgattcac-tttcccacactttttacaca 30429937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 16704519 - 16704445
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctca 189  Q
    |||||||| |||||  | ||||||||||||| |||||||||||||||| | ||||||| ||||| ||||||||||    
T  16704519 ctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactttctacactctctttctca 16704445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 21342280 - 21342337
Alignment:
Q  135 cttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctcagt 191  Q
    ||||||||||||||||||||||||||||| | ||||||| || ||||||||| |||||    
T  21342280 cttcaccctcaatgtatgattcacttttcacaacactttctatacactctttatcagt 21342337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 17143743 - 17143799
Alignment:
Q  136 ttcaccctcaatgtatgattcacttttctca-cactttttacacactctttctcagt 191  Q
    ||||||| ||| |||||||||||||||| || |||||| ||||||||||||||||||    
T  17143743 ttcacccccaaggtatgattcacttttcacaacactttctacacactctttctcagt 17143799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 2311807 - 2311882
Alignment:
Q  115 tctatataacggtgacttagcttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctca 189  Q
    |||| |||| |||||| | ||||||||||||| ||||||||||| |||| | ||||||| |||||| |||||||||    
T  2311807 tctaaataagggtgacattgcttcaccctcaaggtatgattcacctttcacaacactttctacacattctttctca 2311882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 6129550 - 6129500
Alignment:
Q  119 tataacggtgacttagcttcaccctcaatgtatgattcacttttctcacac 169  Q
    ||||| |||||||||||||||||| |||  || ||||||||||||||||||    
T  6129550 tataagggtgacttagcttcacccccaagatacgattcacttttctcacac 6129500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 38944618 - 38944662
Alignment:
Q  117 tatataacggtgacttagcttcaccctcaatgtatgattcacttt 161  Q
    ||||||| ||||||||||| |||||||||| |||||| |||||||    
T  38944618 tatataagggtgacttagcgtcaccctcaaagtatgactcacttt 38944662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 8122893 - 8122936
Alignment:
Q  120 ataacggtgacttagcttcaccctcaatgtatgattcacttttc 163  Q
    |||| |||||| | ||||||||||||| ||||||||||||||||    
T  8122893 ataagggtgacattgcttcaccctcaaggtatgattcacttttc 8122936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 30607026 - 30606971
Alignment:
Q  135 cttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctca 189  Q
    |||||||||||| |||| ||||||||||| | ||||||| ||| ||||||||||||    
T  30607026 cttcaccctcaaggtataattcacttttcacaacactttctactcactctttctca 30606971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 14039 - 13963
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctcagt 191  Q
    |||||||| |||||  | ||||||||||||| ||||||||||||| || | ||||||| ||||||||||||||||||    
T  14039 ctatataagggtgatcttgcttcaccctcaaggtatgattcacttctcacaacactttctacacactctttctcagt 13963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 18428 - 18516
Alignment:
Q  99 gttattctcacacaaatctatataacggtgacttagcttcaccctcaatgtatgattcacttttctcacactttttacacactctttct 187  Q
    |||||||||||||| | |||||||| ||||||||||||||| ||  || |||||||||| ||||   ||||||| ||||||||| ||||    
T  18428 gttattctcacacacacctatataagggtgacttagcttcaacccgaaggtatgattcattttttctacactttgtacacactccttct 18516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 95784 - 95860
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctcagt 191  Q
    |||||||| |||||| | |||||||||| || |||||||||||||||| | ||||||| ||| ||||||||||||||    
T  95784 ctatataagggtgacgttgcttcaccctgaaggtatgattcacttttcacaacactttctacgcactctttctcagt 95860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 15404 - 15480
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctcagt 191  Q
    |||||||| |||||  | ||||||||||||| |||||||||||||||| | ||||||| || | |||||||||||||    
T  15404 ctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactttctagatactctttctcagt 15480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 189
Target Start/End: Complemental strand, 8003 - 7928
Alignment:
Q  115 tctatataacggtgacttagcttcaccctcaatgtatgattcacttttctc-acactttttacacactctttctca 189  Q
    ||||||||| |||||| | | ||||| |||||  ||||||||||||||| | ||||||| ||||||||||||||||    
T  8003 tctatataatggtgacattgtttcacactcaaattatgattcacttttcacaacactttctacacactctttctca 7928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 120985 - 121061
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttctca-cactttttacacactctttctcagt 191  Q
    |||||||| ||||| || ||||||||||||| |||    ||||||||| || |||||| ||||||||||||||||||    
T  120985 ctatataagggtgaatttgcttcaccctcaaggtacacatcacttttcacaacactttatacacactctttctcagt 121061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 28; Significance: 0.000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 68776 - 68823
Alignment:
Q  116 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttc 163  Q
    |||||||| |||||| | ||||| ||||||| ||||||||||||||||    
T  68776 ctatataagggtgaccttgcttctccctcaaggtatgattcacttttc 68823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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