View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5720_high_1 (Length: 616)
Name: NF5720_high_1
Description: NF5720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5720_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 315 - 607
Target Start/End: Original strand, 31079278 - 31079565
Alignment:
| Q |
315 |
tacataataataaagtaaaacctgtctggtgtattgaccnnnnnnnnnnnnnnctgtctggtgtaaaaattcaatcacaggcaccaaatcaagaaattta |
414 |
Q |
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| T |
31079278 |
tacataataataaagtaaaacctgtctggtgtattaaccaaaaaaagaaaa--ctgtctggtgtaaaaattcaatcacaggcaccaaatcaagaaattta |
31079375 |
T |
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| Q |
415 |
taattctatagattttaatctcttcttacctccttgatgccaatatatagtgataaccttttctttcaagtcattaagaggtgtttccatttggttgatt |
514 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31079376 |
taattctatagattttagtctctt---acctccttgatgccaatatatagtgataaccttttctttcaagtcattaagaggtgtttccatttggttgatt |
31079472 |
T |
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| Q |
515 |
aaatttaaagctgaagcttaagttgttgagtgaaggatcatgaatgattttaaagaaaatgcacacgctatcttacatgtaaactagtattat |
607 |
Q |
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| T |
31079473 |
aaatttaaagcttaagtttaagttggtgagtgaaggaccatgaatgattttaaagacaatgcacacgctatcttacctgtaaactaatattat |
31079565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 31079060 - 31079279
Alignment:
| Q |
16 |
tcactaccaaccactgtttttgtaccttttctctatcgttgtcatcgtcgctctcgacggtaattgcggcatcgctctttctggtttttagtgtgttgtt |
115 |
Q |
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||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||| |
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| T |
31079060 |
tcactaccaaccactgtttttgtgccttctctctatcgctgtcatcgtcgctctcgagagtaattgcggcatcgttctttctggtttctagtgtgttgtt |
31079159 |
T |
|
| Q |
116 |
ttcattcaccattattttttatgtttgctgttctagttaatatgatttgttggtaacatggtttagactctagttttcttgtacattattcctgggaaat |
215 |
Q |
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| T |
31079160 |
ttcattcaccattattttttatgtttgctgttctagttaatatgatttgttggtaacatggtttagactctagttttcttgtacattattcctaggaaat |
31079259 |
T |
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| Q |
216 |
ccagtggttagcagatttta |
235 |
Q |
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|||||||||||||||||||| |
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| T |
31079260 |
ccagtggttagcagatttta |
31079279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 406 - 585
Target Start/End: Original strand, 9164484 - 9164656
Alignment:
| Q |
406 |
agaaatttataattctatagattttaatctcttcttacctccttgatgccaatatatagtgataaccttttctttcaagtcattaagaggtgtttccatt |
505 |
Q |
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| T |
9164484 |
agaaatttataattctatagattttagtctctt---acctccttgatgccaata----gtgataaccttttctttcaagtcattaagtggtgttttcatt |
9164576 |
T |
|
| Q |
506 |
tggttgattaaatttaaagctgaagcttaagttgttgagtgaaggatcatgaatgattttaaagaaaatgcacacgctat |
585 |
Q |
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| T |
9164577 |
tggttgattaaatttaaagctgaagcttaagttgctgagtgaaggaccatgaatgattttatagacaatgcacacactat |
9164656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 143 - 282
Target Start/End: Original strand, 10671889 - 10672027
Alignment:
| Q |
143 |
ctgttctagttaatatgatttgttggtaacatggtttagactctagttttcttgtacattattcctgggaaatccagtggttagcagattttaaaaatga |
242 |
Q |
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|||||||| |||||||| |||||||||||| |||| ||||||||||||||||||||||| |||||| |||||| |||||| || |||| |||||||| |
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| T |
10671889 |
ctgttctatttaatatgctttgttggtaacttggtgtagactctagttttcttgtacatcattcct-ttaaatccggtggttggctgattcgaaaaatga |
10671987 |
T |
|
| Q |
243 |
taacactcaattttcgaacacctttagaaccatttgtatg |
282 |
Q |
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| T |
10671988 |
taacactcaattttcaaacaccttgagaaccatttgtatg |
10672027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 42 - 132
Target Start/End: Original strand, 9164295 - 9164385
Alignment:
| Q |
42 |
ttttctctatcgttgtcatcgtcgctctcgacggtaattgcggcatcgctctttctggtttttagtgtgttgttttcattcaccattattt |
132 |
Q |
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||||||| ||||||||| ||||||||||| || ||||||||||||||| ||||||| |||| || |||||||||||| ||||||||||||| |
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| T |
9164295 |
ttttctccatcgttgtcgtcgtcgctctcaacagtaattgcggcatcgttctttctagtttctaatgtgttgttttcgttcaccattattt |
9164385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 9164433 - 9164470
Alignment:
| Q |
310 |
ctttctacataataataaagtaaaacctgtctggtgta |
347 |
Q |
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| T |
9164433 |
ctttctacataataataaattaaaacctgtctggtgta |
9164470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 541 - 597
Target Start/End: Original strand, 10672060 - 10672116
Alignment:
| Q |
541 |
tgagtgaaggatcatgaatgattttaaagaaaatgcacacgctatcttacatgtaaa |
597 |
Q |
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| T |
10672060 |
tgagtgaaggaacatgaatggttttatagagaatgcacaagctatcttacctgtaaa |
10672116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 51488675 - 51488796
Alignment:
| Q |
16 |
tcactaccaaccactgtttttgtaccttttctctatcgttgtcatcgtcgctctcgacggtaattg-----cggcatcgctctttctggtttttagtgtg |
110 |
Q |
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| T |
51488675 |
tcactactgaccactgtttctgtgcattctctctatcgttgtc---gtcgctctcaacggtaattgtgttgcggcatcgttctttctagtttctggtgtg |
51488771 |
T |
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| Q |
111 |
ttgttttcattcaccattatttttt |
135 |
Q |
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|||||||| ||||||||| |||||| |
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| T |
51488772 |
ttgttttcgttcaccattctttttt |
51488796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 7043918 - 7043799
Alignment:
| Q |
16 |
tcactaccaaccactgtttttgtaccttttctctatcgttgtcatcgtcgctctcgacggtaattgcggcatcgctctttctggtttttagtgtgttgtt |
115 |
Q |
| |
|
||||||| |||||||||| ||| |||| ||||||| ||||| |||| ||||| | ||||||| |||||| ||| ||| |||| | |||||||||| |
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| T |
7043918 |
tcactactgaccactgtttatgtgccttctctctattgttgttgtcgttgctcttagctgtaattgtggcatccttctgtctagtttctggtgtgttgtt |
7043819 |
T |
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| Q |
116 |
ttcattcaccattatttttt |
135 |
Q |
| |
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||| ||||||||| |||||| |
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| T |
7043818 |
ttcgttcaccattctttttt |
7043799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 530
Target Start/End: Original strand, 23262159 - 23262224
Alignment:
| Q |
465 |
tgataaccttttctttcaagtcattaagaggtgtttccatttggttgattaaatttaaagctgaag |
530 |
Q |
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||||||||||||| ||||||||||||||||| ||| | ||||||||||| |||||| |||||| |
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| T |
23262159 |
tgataaccttttccttcaagtcattaagaggagttcgaaaatggttgattaagtttaaaactgaag |
23262224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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