View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5720_low_2 (Length: 597)
Name: NF5720_low_2
Description: NF5720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5720_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 485; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 18 - 588
Target Start/End: Complemental strand, 45889232 - 45888666
Alignment:
| Q |
18 |
caaatagcatggctcttctcttatactgttgttgcttccataccaggannnnnnnacagagctccaagatagagaagaagaatttggcatatctgacatc |
117 |
Q |
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| T |
45889232 |
caaatagcatggctcttctcttatactgttgttgcttccataccaggatttttttacagagctccaagatagagaaaaagaatttggcatatctgacatc |
45889133 |
T |
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| Q |
118 |
cagcttggtctaacaactcttgaagaagttttcttgaatattgcaaaacaagcagagctagaaagtgctgcagctgaagggagcttagtgactttgacct |
217 |
Q |
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| T |
45889132 |
cagcttggtctaacaactcttgaagaagttttcttgaatattgcaaaacaagcaaagctagaaagtgctgcagctgaagggagcttagtgactttgacct |
45889033 |
T |
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| Q |
218 |
tgaaatctggagagtctgtgcaggtaagtgtatcgcattttctttcggcaaatgcgtctctcaattctcaagtgattgagttataagagtatgccaaaaa |
317 |
Q |
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| T |
45889032 |
tgaaatctggagagtctgtgcaggtaagtgtatcacattttctttcggcaaatgcgtctc--aattctcaagtgattgagttataagagtatgccaaaaa |
45888935 |
T |
|
| Q |
318 |
gtaaactagtacaattgcatatatagtacatactatgaaacactaacacatacattgaacaccacaatatactgaaatgtcaacaccggtaataatctga |
417 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45888934 |
gtaaactagtacaattacata----gtacatactatgaaacactaaaacatacattgaacaccacaatatactgaaatgtcaacaccggtaataatttga |
45888839 |
T |
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| Q |
418 |
gaaatgaagtaataggatgtaaccaaatatgtcagtgtcatgttaccggacacgcctttaatatgaaatgttggtgctaaatagagtacatccatcgtga |
517 |
Q |
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| T |
45888838 |
gaaatgaagtaataggatgtaaccaaatatgtcagtgtcatgttaccggacacgcctttaatatgaaatgttggtgctaaatagagtacatccatcgtga |
45888739 |
T |
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| Q |
518 |
caaaatacaaaaccattttctttttcaattgaacaaa--ttgtagctgtaacaactaactatttttgatgatg |
588 |
Q |
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| T |
45888738 |
caaaatacaaaaccattttctttttcaattgaacaaagtttgtagctgtaacaactaactatttttgctgatg |
45888666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 74 - 262
Target Start/End: Original strand, 12984997 - 12985186
Alignment:
| Q |
74 |
cagagctccaagatagagaagaagaatttggcatatctgacatccagcttggtctaacaactcttgaagaagttttcttgaatattgcaaaacaagcaga |
173 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12984997 |
cagagctccaagatagaaaagaagaatttggcatatctgacatccagcttggtctaacaactcttgaagaagttttcttgaatattgcaaagcaagcaga |
12985096 |
T |
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| Q |
174 |
gctagaaagtgctgcagctgaagggagcttagtgactttgaccttgaaatctggagagtctgtgcaggtaagtgt-atcgcattttcttt |
262 |
Q |
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| T |
12985097 |
gctagaaagtgctgcagccgaagggaccctagtgactttgaccttgacatctggagagtctgtccaggtacgtgtaaccgcattttcttt |
12985186 |
T |
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