View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5720_low_3 (Length: 448)
Name: NF5720_low_3
Description: NF5720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5720_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 16 - 431
Target Start/End: Complemental strand, 31426439 - 31425997
Alignment:
| Q |
16 |
attaataaacctacaaacatacttgttcatctgaatttggcttatgcagaacttgaagtgtctacgtctccttctctgtcttgattccaggacactatac |
115 |
Q |
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| T |
31426439 |
attaataaatctacaaacatacttgttaatctgaatttggcttatgcagaatttgaagtgtctacgtctccttctctgtcttgattccaggacactatac |
31426340 |
T |
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| Q |
116 |
ttctcaatccattgattctactaatctgccatccattatcat------catcgccattgatcctagatctaaggaaaatttcccatattacagatagatt |
209 |
Q |
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| T |
31426339 |
ttctcaatccattgattctactaatctgccatccattatcattatcatcatcgccattgatcctagatctaaggaaaatttcccatattacagatagatt |
31426240 |
T |
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| Q |
210 |
gcagaactttgacagttagttcgctgtaatgcccaaagacccttcactctctcaattgacaagatgcttctatctaatccct------------------ |
291 |
Q |
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| T |
31426239 |
gcagaactttgacagttagtccgctgcaatgcccaaagacccttcactctctcaattgacaagatgattctatctaatccctatctcttgtgtatattca |
31426140 |
T |
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| Q |
292 |
---tacaatctaacccaactgactaagggggtaacctatcaatcattttgatgagaaattatatctttattagaagacttgacgataagcgccgattcac |
388 |
Q |
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| T |
31426139 |
cattacaatctaacccaactgactaagggggtaacctatcaatcattttgatgagaaattatatctttattagaagacttgacgataagcgccgattcac |
31426040 |
T |
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| Q |
389 |
agagaccaaggctctataaattgaccatgtgcatcactctaat |
431 |
Q |
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| T |
31426039 |
agagaccacggctctataaattgaccatgtgcatcactctaat |
31425997 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 367
Target Start/End: Complemental strand, 10003161 - 10003093
Alignment:
| Q |
299 |
taacccaactgactaagggggtaacctatcaatcattttgatgagaaattatatctttattagaagact |
367 |
Q |
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| T |
10003161 |
taacccaactatctaaggccgtaacctatcagtcattttgataagaagtgatatctttatcaaaagact |
10003093 |
T |
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