View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5720_low_4 (Length: 376)

Name: NF5720_low_4
Description: NF5720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5720_low_4
NF5720_low_4
[»] chr4 (18 HSPs)
chr4 (18-366)||(1513540-1513888)
chr4 (18-366)||(1489497-1489845)
chr4 (18-364)||(1508141-1508487)
chr4 (148-359)||(1537910-1538121)
chr4 (152-366)||(12121593-12121807)
chr4 (70-182)||(1530103-1530215)
chr4 (104-358)||(558197-558453)
chr4 (70-285)||(1517716-1517931)
chr4 (187-366)||(1534127-1534306)
chr4 (93-285)||(1496136-1496328)
chr4 (307-359)||(8184173-8184225)
chr4 (309-366)||(546819-546876)
chr4 (239-328)||(1552944-1553033)
chr4 (306-358)||(644734-644786)
chr4 (307-366)||(1524619-1524678)
chr4 (306-347)||(570254-570295)
chr4 (306-366)||(55505241-55505301)
chr4 (37-109)||(55909321-55909392)
[»] chr2 (2 HSPs)
chr2 (32-347)||(44575650-44575972)
chr2 (307-359)||(45245228-45245280)
[»] chr3 (3 HSPs)
chr3 (249-366)||(51113917-51114034)
chr3 (239-366)||(514864-514991)
chr3 (306-358)||(1657154-1657206)
[»] chr7 (1 HSPs)
chr7 (308-360)||(15092293-15092345)
[»] chr8 (2 HSPs)
chr8 (306-357)||(28246438-28246489)
chr8 (306-347)||(21235461-21235502)
[»] chr6 (2 HSPs)
chr6 (308-358)||(28934954-28935004)
chr6 (315-359)||(6432073-6432117)


Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 1513888 - 1513540
Alignment:
Q  18 gaaatatcattcaaaaatcgataagtaaatacacattttcaagttgacatttaaaaacagagcaatatctcatagaagtaaatttaaaaacaaaaacatc 117  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1513888 gaaatatcatgcaaaaatcgataagtaaatacacattttcaagttgacatttaaaaacagagcaatatctcatagaagtaaatttaaaaacaaaaacatc 1513789  T
Q  118 ttacattaaaaagttcaaactacaagaaatcacttttagaatactagcaaacaatgcatccttgaagtgataagagctccatctctctgtcgctgaaatg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1513788 ttacattaaaaagttcaaactacaagaaatcacttttagaatactagcaaacaatgcatccttgaagtgataagagctccatctctctgtcgctgaaatg 1513689  T
Q  218 ataaccatatggaggttataactttcttaacgatggccttgaaaatatcaatgaggcaagaatatcaccattcactttagaacaatatttcaaattgatc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1513688 ataaccatatggaggttataactttcttaacgatggccttgaaaatatcaatgaggcaagaacatcaccattcactttagaacaatatttcaaattgatc 1513589  T
Q  318 tctctcagttgtgtgcatttttctagcacaagcttcactcccatctctg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1513588 tctctcagttgtgtgcatttttctagcacaagcttcactcccatctctg 1513540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 1489845 - 1489497
Alignment:
Q  18 gaaatatcattcaaaaatcgataagtaaatacacattttcaagttgacatttaaaaacagagcaatatctcatagaagtaaatttaaaaacaaaaacatc 117  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1489845 gaaatatcatgcaaaaatcgataagtaaatacacattttcaagttgacatttaaaaacagagcaatatctcatagaagtaaatttaaaaacaaaaacatc 1489746  T
Q  118 ttacattaaaaagttcaaactacaagaaatcacttttagaatactagcaaacaatgcatccttgaagtgataagagctccatctctctgtcgctgaaatg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1489745 ttacattaaaaagttcaaactacaagaaatcacttttagaatactagcaaacaatgcatccttgaagtgataagagctccatctctctgtcgctgaattg 1489646  T
Q  218 ataaccatatggaggttataactttcttaacgatggccttgaaaatatcaatgaggcaagaatatcaccattcactttagaacaatatttcaaattgatc 317  Q
    |||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| |  |||   |||||||||||||    
T  1489645 ataatcatatggagttgataactttcttaacgatggccttgaaaatatcaatgaggcaagaacatcatcatgcacttgaccacacattttcaaattgatc 1489546  T
Q  318 tctctcagttgtgtgcatttttctagcacaagcttcactcccatctctg 366  Q
    ||||| ||||||| |||||||||||||||| ||||||||||| ||||||    
T  1489545 tctcttagttgtgcgcatttttctagcacatgcttcactcccttctctg 1489497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 1508487 - 1508141
Alignment:
Q  18 gaaatatcattcaaaaatcgataagtaaatacacattttcaagttgacatttaaaaacagagcaatatctcatagaagtaaatttaaaaacaaaaacatc 117  Q
    |||||||||| |||||| |||| |||||||||| |||| |||||||||||||||||| |||||||||| |||||||| ||||||| ||||||||||||||    
T  1508487 gaaatatcatgcaaaaaccgatgagtaaatacatatttgcaagttgacatttaaaaatagagcaatatttcatagaactaaatttcaaaacaaaaacatc 1508388  T
Q  118 ttacattaaaaagttcaaactacaagaaatcacttttagaatactagcaaacaatgcatccttgaagtgataagagctccatctctctgtcgctgaaatg 217  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||| ||||||||| |    
T  1508387 ttacattcaaaagttcaaactacaagaaagcacttttagaatactagcaaacaatgcatccttgacgtgataagtgttccatctctctatcgctgaaacg 1508288  T
Q  218 ataaccatatggaggttataactttcttaacgatggccttgaaaatatcaatgaggcaagaatatcaccattcactttagaacaatatttcaaattgatc 317  Q
    |||||||   |||  |  ||  ||||| |||||||||||||||||||||||||||||||||| |||||||   || |||| || ||||||||||||||||    
T  1508287 ataaccaagaggaattgttatttttctcaacgatggccttgaaaatatcaatgaggcaagaacatcaccacgtaccttaggaccatatttcaaattgatc 1508188  T
Q  318 tctctcagttgtgtgcatttttctagcacaagcttcactcccatctc 364  Q
    ||||| ||||||||||||||||||||| || ||||||||||||||||    
T  1508187 tctcttagttgtgtgcatttttctagcgcatgcttcactcccatctc 1508141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 148 - 359
Target Start/End: Complemental strand, 1538121 - 1537910
Alignment:
Q  148 cacttttagaatactagcaaacaatgcatccttgaagtgataagagctccatctctctgtcgctgaaatgataaccatatggaggttataactttcttaa 247  Q
    |||| |||||| ||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||| ||||||||||||||| |  ||||||||||||    
T  1538121 cactcttagaaaactagcaaacaatgcatccttgacgtgataagagttccatttctctgtcgctgaaacgataaccatatggagatgttaactttcttaa 1538022  T
Q  248 cgatggccttgaaaatatcaatgaggcaagaatatcaccattcactttagaacaatatttcaaattgatctctctcagttgtgtgcatttttctagcaca 347  Q
    |||||||||||||||||||||||||| ||||| |||| ||| ||||| |  |||   |||||||||||||||||| ||||| ||||||||||||||||||    
T  1538021 cgatggccttgaaaatatcaatgaggtaagaacatcatcatccacttgaacacaccttttcaaattgatctctcttagttgagtgcatttttctagcaca 1537922  T
Q  348 agcttcactccc 359  Q
      ||||||||||    
T  1537921 tacttcactccc 1537910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 152 - 366
Target Start/End: Complemental strand, 12121807 - 12121593
Alignment:
Q  152 tttagaatactagcaaacaatgcatccttgaagtgataagagctccatctctctgtcgctgaaatgataaccatatggaggttataactttcttaacgat 251  Q
    |||||||||||||||||||||||| |||||| |||||||||| ||||||||  ||| | ||||| |||||| || ||||| |   |||||||| || |||    
T  12121807 tttagaatactagcaaacaatgcaaccttgacgtgataagagttccatctccttgttgttgaaacgataacgatctggagttgtaaactttctcaatgat 12121708  T
Q  252 ggccttgaaaatatcaatgaggcaagaatatcaccattcactttagaacaatatttcaaattgatctctctcagttgtgtgcatttttctagcacaagct 351  Q
    |||||||||||||||||||||||||||| ||||| || ||||| |  |||||||||||||| ||||||||| ||||||||||||||||||| |||| |||    
T  12121707 ggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgcatttttctaccacatgct 12121608  T
Q  352 tcactcccatctctg 366  Q
    |||||||||||||||    
T  12121607 tcactcccatctctg 12121593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 1530215 - 1530103
Alignment:
Q  70 aaaaacagagcaatatctcatagaagtaaatttaaaaacaaaaacatcttacattaaaaagttcaaactacaagaaatcacttttagaatactagcaaac 169  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||| ||||    
T  1530215 aaaaacagagaaatatctcatagaagtaaatttgaaaacaaaaacatcttacatgcaagagttcaaactacaagaaatcacttttagaatactaggaaac 1530116  T
Q  170 aatgcatccttga 182  Q
    |||||||||||||    
T  1530115 aatgcatccttga 1530103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 104 - 358
Target Start/End: Original strand, 558197 - 558453
Alignment:
Q  104 aaaacaaaaacatcttacattaaaaa--gttcaaactacaagaaatcacttttagaatactagcaaacaatgcatccttgaagtgataagagctccatct 201  Q
    |||||||||||||| |||||| || |  ||||||||||||  ||  |||||||||| ||||||||  |||||||||||| | |  |||||||||||||||    
T  558197 aaaacaaaaacatcctacatttaagatcgttcaaactacagcaatgcacttttagattactagcagccaatgcatcctttacgcaataagagctccatct 558296  T
Q  202 ctctgtcgctgaaatgataaccatatggaggttataactttcttaacgatggccttgaaaatatcaatgaggcaagaatatcaccattcactttagaaca 301  Q
    |||||||||||||| || ||  |||||||| |  ||||||||| || ||||| ||||||| ||| |||||| |||||  || ||||| || ||||||       
T  558297 ctctgtcgctgaaacgacaaggatatggagttgttaactttctcaatgatggtcttgaaagtattaatgagacaagatcatgaccatgcattttagagat 558396  T
Q  302 atatttcaaattgatctctctcagttgtgtgcatttttctagcacaagcttcactcc 358  Q
      || |||||||||| ||||||| ||||||||| |||||||||||| ||||||||||    
T  558397 gcatctcaaattgatttctctcatttgtgtgcagttttctagcacatgcttcactcc 558453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 285
Target Start/End: Complemental strand, 1517931 - 1517716
Alignment:
Q  70 aaaaacagagcaatatctcatagaagtaaatttaaaaacaaaaacatcttacattaaaaagttcaaactacaagaaatcacttttagaatactagcaaac 169  Q
    ||||||| || | |||||||||||| ||||||  ||||||||||||||||| ||| || |||||||||  ||   || || |||||||||||||| ||||    
T  1517931 aaaaacaaagtagtatctcatagaaataaattcgaaaacaaaaacatcttaaatttaatagttcaaacatcagtgaagcatttttagaatactagtaaac 1517832  T
Q  170 aatgcatccttgaagtgataagagctccatctctctgtcgctgaaatgataaccatatggaggttataactttcttaacgatggccttgaaaatatcaat 269  Q
    | | ||||||||  |  |||| || ||||||||  ||||||||||| |||||  || ||||| |  ||  ||| | || ||||||||||| |||||||||    
T  1517831 attacatccttggcgcaataaaagttccatctccttgtcgctgaaacgataatgatctggagttgttacatttttcaatgatggccttgacaatatcaat 1517732  T
Q  270 gaggcaagaatatcac 285  Q
    ||| |||||| |||||    
T  1517731 gagacaagaacatcac 1517716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 366
Target Start/End: Complemental strand, 1534306 - 1534127
Alignment:
Q  187 ataagagctccatctctctgtcgctgaaatgataaccatatggaggttataactttcttaacgatggccttgaaaatatcaatgaggcaagaatatcacc 286  Q
    ||||||| ||||||||  ||||||||||| |||||| || ||||| |  ||  ||| | || ||||||||||| ||||||||||||||||||| |||||     
T  1534306 ataagagttccatctccttgtcgctgaaacgataacgatctggagttgttacatttttcaatgatggccttgacaatatcaatgaggcaagaacatcact 1534207  T
Q  287 attcactttagaacaatatttcaaattgatctctctcagttgtgtgcatttttctagcacaagcttcactcccatctctg 366  Q
     ||||| ||| |||||||| |||||| |||||||   |||||||  || || |||| |||| |||| |||||| ||||||    
T  1534206 tttcacattacaacaatatatcaaatcgatctcttgtagttgtgcacagttctctaccacatgcttaactcccttctctg 1534127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 285
Target Start/End: Complemental strand, 1496328 - 1496136
Alignment:
Q  93 aagtaaatttaaaaacaaaaacatcttacattaaaaagttcaaactacaagaaatcacttttagaatactagcaaacaatgcatccttgaagtgataaga 192  Q
    |||||||||| |||||| |||||||||||||| || |||||||||  ||   || || ||||||| |||||| ||||| | ||||||||  |  ||||||    
T  1496328 aagtaaatttgaaaacagaaacatcttacatttaagagttcaaacatcagtgaagcatttttagattactagtaaacattacatccttggcgcaataaga 1496229  T
Q  193 gctccatctctctgtcgctgaaatgataaccatatggaggttataactttcttaacgatggccttgaaaatatcaatgaggcaagaatatcac 285  Q
    | ||||||||  ||||| ||||  |||||| || ||||| |  ||  ||| | |||||||||||||| |||||||||||| |||||| |||||    
T  1496228 gttccatctccttgtcgttgaatggataacgatgtggagttgttacatttttcaacgatggccttgacaatatcaatgagacaagaacatcac 1496136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 359
Target Start/End: Complemental strand, 8184225 - 8184173
Alignment:
Q  307 tcaaattgatctctctcagttgtgtgcatttttctagcacaagcttcactccc 359  Q
    ||||||||||| || ||||||||||||| |||||||||||| |||||||||||    
T  8184225 tcaaattgatcactttcagttgtgtgcaattttctagcacatgcttcactccc 8184173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 309 - 366
Target Start/End: Original strand, 546819 - 546876
Alignment:
Q  309 aaattgatctctctcagttgtgtgcatttttctagcacaagcttcactcccatctctg 366  Q
    |||||||||||||| |||| |||||| |||||||||||| | ||||||||| ||||||    
T  546819 aaattgatctctcttagttttgtgcagttttctagcacatgtttcactcccttctctg 546876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 328
Target Start/End: Complemental strand, 1553033 - 1552944
Alignment:
Q  239 ctttcttaacgatggccttgaaaatatcaatgaggcaagaatatcaccattcactttagaacaatatttcaaattgatctctctcagttg 328  Q
    |||||| || |||||||||||||||| |||||| |||| || ||||  || |||||||  ||||  |||||||||||||||||| |||||    
T  1553033 ctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagttg 1552944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 644734 - 644786
Alignment:
Q  306 ttcaaattgatctctctcagttgtgtgcatttttctagcacaagcttcactcc 358  Q
    ||||||| ||||||||||||||||||||||||||| | |||| | ||||||||    
T  644734 ttcaaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactcc 644786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 1524678 - 1524619
Alignment:
Q  307 tcaaattgatctctctcagttgtgtgcatttttctagcacaagcttcactcccatctctg 366  Q
    ||||||| |||||||||||||||||||| ||||||| ||||   ||||||||| ||||||    
T  1524678 tcaaattaatctctctcagttgtgtgcagttttctatcacataattcactcccctctctg 1524619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 570254 - 570295
Alignment:
Q  306 ttcaaattgatctctctcagttgtgtgcatttttctagcaca 347  Q
    |||||||||||||| |||||||||||||| ||||||| ||||    
T  570254 ttcaaattgatctccctcagttgtgtgcagttttctaccaca 570295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 366
Target Start/End: Complemental strand, 55505301 - 55505241
Alignment:
Q  306 ttcaaattgatctctctcagttgtgtgcatttttctagcacaagcttcactcccatctctg 366  Q
    ||||| ||||||||||| ||||||||||| ||||||| |||  | ||||||||| ||||||    
T  55505301 ttcaagttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctg 55505241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 55909392 - 55909321
Alignment:
Q  37 gataagtaaatacacattttcaagttgacatttaaaaacagagcaatatctcatagaagtaaatttaaaaaca 109  Q
    |||||||||||||||||||  ||||||||||||||| | | || ||| |||| ||||||||||| | ||||||    
T  55909392 gataagtaaatacacatttgtaagttgacatttaaaga-aaagtaatttctcttagaagtaaatcttaaaaca 55909321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 32 - 347
Target Start/End: Complemental strand, 44575972 - 44575650
Alignment:
Q  32 aaatcgataagtaaatacacattttcaagttgacatttaaaaacagagcaatatctcatagaagtaaatttaaaa-acaaaaacatcttacattaaaaag 130  Q
    |||| ||| |||||||| ||||||  ||||| |||||||||| || || |||||||||||||||||||||||||  | |||||||||||||||| || ||    
T  44575972 aaattgatgagtaaataaacatttgtaagtttacatttaaaa-caaagtaatatctcatagaagtaaatttaaagtaaaaaaacatcttacatttaagag 44575874  T
Q  131 ttcaaactacaagaaatcacttttagaatactagcaaacaatgcatcc-------ttgaagtgataagagctccatctctctgtcgctgaaatgataacc 223  Q
    ||||||||||||  || || |||| |||||||||||||||||||||||       |||| | |||||||| |||||||||  ||| ||||||| || ||     
T  44575873 ttcaaactacaatgaagcaattttcgaatactagcaaacaatgcatcccttgacgttgacgcgataagagttccatctcttggtcactgaaatcatcacg 44575774  T
Q  224 atatggaggttataactttcttaacgatggccttgaaaatatcaatgaggcaagaatatcaccattcactttagaacaatatttcaaattgatctctctc 323  Q
    |||||||  |  ||||||||| || ||||||||||||| |||||| |||||||||| ||||| || ||| |||  ||||| | ||||||||| |||||||    
T  44575773 atatggaattgttaactttctcaatgatggccttgaaagtatcaacgaggcaagaacatcacgatgcacattatcacaatttctcaaattgagctctctc 44575674  T
Q  324 agttgtgtgcatttttctagcaca 347  Q
     |||||||||| ||||||| ||||    
T  44575673 ggttgtgtgcagttttctaccaca 44575650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 359
Target Start/End: Complemental strand, 45245280 - 45245228
Alignment:
Q  307 tcaaattgatctctctcagttgtgtgcatttttctagcacaagcttcactccc 359  Q
    |||||||||||||| | ||||||||||| ||||||| |||| | |||||||||    
T  45245280 tcaaattgatctctgtaagttgtgtgcaattttctaccacatgtttcactccc 45245228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 249 - 366
Target Start/End: Complemental strand, 51114034 - 51113917
Alignment:
Q  249 gatggccttgaaaatatcaatgaggcaagaatatcaccattcactttagaacaatatttcaaattgatctctctcagttgtgtgcatttttctagcacaa 348  Q
    ||||||||||||||||||| |||||||| || || | ||| ||||||| |||||   || ||||| |||||||| |||| |||||||||||||| ||||     
T  51114034 gatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcttagttttgtgcatttttctaccacat 51113935  T
Q  349 gcttcactcccatctctg 366  Q
    ||||||||||| ||||||    
T  51113934 gcttcactcccttctctg 51113917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 366
Target Start/End: Complemental strand, 514991 - 514864
Alignment:
Q  239 ctttcttaacgatggccttgaaaatatcaatgaggcaagaatatcaccattcactttagaacaatatttcaaattgatctctctcagttgtgtgcatttt 338  Q
    |||||| || |||||||||||||||| || || ||||| || || |  || |||||||  ||||  | | |||||||||||||||||| ||||||| |||    
T  514991 ctttctcaatgatggccttgaaaataccattggggcaacaacattataatgcactttattacaacctcttaaattgatctctctcagtcgtgtgcagttt 514892  T
Q  339 tctagcacaagcttcactcccatctctg 366  Q
    |  | |||| ||||||||||| ||||||    
T  514891 ttcaccacatgcttcactcccgtctctg 514864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 1657154 - 1657206
Alignment:
Q  306 ttcaaattgatctctctcagttgtgtgcatttttctagcacaagcttcactcc 358  Q
    ||||||| || |||||||||||||||||||||||| | |||| || |||||||    
T  1657154 ttcaaatcgacctctctcagttgtgtgcatttttcaaccacatgcgtcactcc 1657206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 15092345 - 15092293
Alignment:
Q  308 caaattgatctctctcagttgtgtgcatttttctagcacaagcttcactccca 360  Q
    |||||| |||||||||| ||||||||| |||||||||||| | ||||||||||    
T  15092345 caaattaatctctctcaattgtgtgcagttttctagcacatgtttcactccca 15092293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 28246489 - 28246438
Alignment:
Q  306 ttcaaattgatctctctcagttgtgtgcatttttctagcacaagcttcactc 357  Q
    |||||||||| |||||||||||||||||||||||| | |||| || ||||||    
T  28246489 ttcaaattgacctctctcagttgtgtgcatttttcaaccacatgcgtcactc 28246438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 21235461 - 21235502
Alignment:
Q  306 ttcaaattgatctctctcagttgtgtgcatttttctagcaca 347  Q
    |||||||||||||| |||||||||||||| ||||||| ||||    
T  21235461 ttcaaattgatctccctcagttgtgtgcagttttctaccaca 21235502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 28934954 - 28935004
Alignment:
Q  308 caaattgatctctctcagttgtgtgcatttttctagcacaagcttcactcc 358  Q
    ||||| ||||||||| ||||||||||| ||||||| |||| ||||||||||    
T  28934954 caaatagatctctcttagttgtgtgcaattttctaccacatgcttcactcc 28935004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 359
Target Start/End: Original strand, 6432073 - 6432117
Alignment:
Q  315 atctctctcagttgtgtgcatttttctagcacaagcttcactccc 359  Q
    |||| ||||| ||||||||||||||||| |||||| |||||||||    
T  6432073 atctttctcaattgtgtgcatttttctaccacaagtttcactccc 6432117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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