View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5720_low_6 (Length: 280)
Name: NF5720_low_6
Description: NF5720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5720_low_6 |
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| [»] scaffold0176 (1 HSPs) |
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Alignment Details
Target: scaffold0176 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 30626 - 30378
Alignment:
| Q |
18 |
ttagggactagactttataatagattttttaggaagaacaataccattgttaaacacccacactgggaatgcaccaagatcctctgatagctgtttcaat |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30626 |
ttagggactagactttataatggattttttaggaagaacaataccactgttaaacacccacactgggaatgcaccaagatcctctgatagctgtttcaat |
30527 |
T |
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| Q |
118 |
aaacaataagacttagatttttcattttgataaggaaaggattaatatttttgaaaggaaataaaattacttgaagcccctcaaaataaccaaatccatc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30526 |
aaacaataagacttagatttttcattttgataaggaaaggattaatattttagaaaggaaataaaattacttgaagcccctcaaaataaccaaatccatc |
30427 |
T |
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| Q |
218 |
atcagtccaataattccatatgtcattaaagtggccaggtctctcttcc |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30426 |
atcagtccaataattccatatgtcattaaagtggccaggtctctcttcc |
30378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 34170302 - 34170054
Alignment:
| Q |
18 |
ttagggactagactttataatagattttttaggaagaacaataccattgttaaacacccacactgggaatgcaccaagatcctctgatagctgtttcaat |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34170302 |
ttagggactagactttataatggattttttaggaagaacaataccactgttaaacacccacactgggaatgcaccaagatcctctgatagctgtttcaat |
34170203 |
T |
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| Q |
118 |
aaacaataagacttagatttttcattttgataaggaaaggattaatatttttgaaaggaaataaaattacttgaagcccctcaaaataaccaaatccatc |
217 |
Q |
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| T |
34170202 |
aaacaataagacttagatttttcattttgataaggaaaggattaatattttagaaaggaaataaaattacttgaagcccctcaaaataaccaaatccatc |
34170103 |
T |
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| Q |
218 |
atcagtccaataattccatatgtcattaaagtggccaggtctctcttcc |
266 |
Q |
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| T |
34170102 |
atcagtccaataattccatatgtcattaaagtggccaggtctctcttcc |
34170054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 34213901 - 34213653
Alignment:
| Q |
18 |
ttagggactagactttataatagattttttaggaagaacaataccattgttaaacacccacactgggaatgcaccaagatcctctgatagctgtttcaat |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34213901 |
ttagggactagactttataatggattttttaggaagaacaataccactgttaaacacccacactgggaatgcaccaagatcctctgatagctgtttcaat |
34213802 |
T |
|
| Q |
118 |
aaacaataagacttagatttttcattttgataaggaaaggattaatatttttgaaaggaaataaaattacttgaagcccctcaaaataaccaaatccatc |
217 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34213801 |
aaacaataagacttaaatttttcattttgataaggaaaggattaatattttagaaaggaaataaaattacttgaagcccctcaaaataaccaaatccatc |
34213702 |
T |
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| Q |
218 |
atcagtccaataattccatatgtcattaaagtggccaggtctctcttcc |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34213701 |
atcagtccaataattccatatgtcattaaagtggccaggtctctcttcc |
34213653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 34163805 - 34163717
Alignment:
| Q |
18 |
ttagggactagactttataatagattttttaggaagaacaataccattgttaaacacccacactgggaatgcaccaagatcctctgata |
106 |
Q |
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| T |
34163805 |
ttagggactagactttataatggattttttaggaagaacaataccactgttaaacacccacactgggaatgcaccaagatcctctgata |
34163717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 34465102 - 34465028
Alignment:
| Q |
185 |
tacttgaagcccctcaaaataaccaaatccatcatcagtccaataattccatatgtcattaaagtggccaggtct |
259 |
Q |
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||||||||| ||||||||| |||||| ||||||||| |||||||||||||| || ||||| ||||| |||||||| |
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| T |
34465102 |
tacttgaagaccctcaaaaaaaccaagtccatcatctgtccaataattccaaatatcattcaagtgaccaggtct |
34465028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 266
Target Start/End: Complemental strand, 34448923 - 34448842
Alignment:
| Q |
185 |
tacttgaagcccctcaaaataaccaaatccatcatcagtccaataattccatatgtcattaaagtggccaggtctctcttcc |
266 |
Q |
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|||| |||| |||||| || |||||| ||||||||| |||||||| ||||| || ||||||||||| |||| |||||||||| |
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| T |
34448923 |
tactagaagaccctcataaaaaccaagtccatcatccgtccaatacttccaaatatcattaaagtgtccagctctctcttcc |
34448842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 259
Target Start/End: Complemental strand, 34438018 - 34437935
Alignment:
| Q |
176 |
aaataaaattacttgaagcccctcaaaataaccaaatccatcatcagtccaataattccatatgtcattaaagtggccaggtct |
259 |
Q |
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||||||| ||||||||| ||||| ||||||||||||| || || |||||||||||||| | ||||||||||| || ||||| |
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| T |
34438018 |
aaataaacctacttgaagaccctcgtaataaccaaatccctcgtctgtccaataattccaaacatcattaaagtgtccgggtct |
34437935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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