View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5720_low_8 (Length: 251)

Name: NF5720_low_8
Description: NF5720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5720_low_8
NF5720_low_8
[»] chr3 (3 HSPs)
chr3 (1-233)||(27540034-27540266)
chr3 (8-233)||(20304870-20305095)
chr3 (99-233)||(25808572-25808707)
[»] chr6 (1 HSPs)
chr6 (1-233)||(7653980-7654207)
[»] scaffold0741 (1 HSPs)
scaffold0741 (8-233)||(5369-5594)
[»] chr7 (1 HSPs)
chr7 (8-233)||(26176511-26176736)
[»] chr5 (1 HSPs)
chr5 (8-233)||(37635597-37635822)
[»] scaffold0065 (1 HSPs)
scaffold0065 (8-233)||(41353-41578)
[»] chr4 (1 HSPs)
chr4 (104-233)||(16599892-16600021)
[»] chr1 (2 HSPs)
chr1 (100-232)||(15219524-15219656)
chr1 (17-232)||(15200469-15200674)
[»] chr2 (1 HSPs)
chr2 (127-233)||(12398296-12398402)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 27540034 - 27540266
Alignment:
Q  1 tctttgtctgaacttgcttctttccaagcgctatttgttccttggcagctgttgttacctttgtgtttacctttctaggatacaatcttctacatacggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27540034 tctttgtctgaacttgcttctttccaagcgctatttgttccttggcagctgttgttacctttgtgtttacctttctaggatacaatcttctacagacggt 27540133  T
Q  101 gacgtcatgcccgatattctgtcagggagaacataaatcgggcatccattcgtaggccacgacaaccgggaaagcatattcttccctctcaacaacaatt 200  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27540134 gacgtcatgcccgatattctgacagtgagaacaaaaatcgggcatccattcataggccacgacaaccgggaaagcatatccttccctctcaacaacaatt 27540233  T
Q  201 tcatgaaaaatcttacaggagaaatccatatca 233  Q
    |||||||||||||||||||||||||||||||||    
T  27540234 tcatgaaaaatcttacaggagaaatccatatca 27540266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 8 - 233
Target Start/End: Original strand, 20304870 - 20305095
Alignment:
Q  8 ctgaacttgcttctttccaagcgctatttgttccttggcagctgttgttacctttgtgtttacctttctaggatacaatcttctacatacggtgacgtca 107  Q
    |||||||||||| || ||| ||  ||||| ||| ||||||| |||| |  |||||||| || ||||||| ||||||| |||||| || || |||||||||    
T  20304870 ctgaacttgctttttcccatgccatattttttctttggcagttgttatgtcctttgtgatttcctttcttggatacagtcttctgcagacagtgacgtca 20304969  T
Q  108 tgcccgatattctgtcagggagaacataaatcgggcatccattcgtaggccacgacaaccgggaaagcatattcttccctctcaacaacaatttcatgaa 207  Q
    || ||||||||||| ||| ||||||| || |||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  20304970 tggccgatattctgacagtgagaacagaagtcgggcatccattcataggccacgacaaccgggaaagcatatcattccctctcaacaacaatttcatgaa 20305069  T
Q  208 aaatcttacaggagaaatccatatca 233  Q
    ||||||||| |||| |||||||||||    
T  20305070 aaatcttacgggaggaatccatatca 20305095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 233
Target Start/End: Original strand, 25808572 - 25808707
Alignment:
Q  99 gtgacgtcatgcccgatattctgtcagggagaacataaatcgggcatccattcgtaggccacgacaaccgggaaagcatattcttccctctcaacaacaa 198  Q
    |||||||| || || |||||||| ||  ||||||| ||||| | || |||||| ||||||||  |||||| ||| ||| |  ||||||| || |||||||    
T  25808572 gtgacgtcgtgaccaatattctgacaatgagaacaaaaatcagtcaaccattcataggccaccgcaaccgtgaaggcaaacccttccctttcgacaacaa 25808671  T
Q  199 tttcatgaaaa-atcttacaggagaaatccatatca 233  Q
    | ||||||||| | ||||| ||||||||||||||||    
T  25808672 tctcatgaaaataacttacgggagaaatccatatca 25808707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 7654207 - 7653980
Alignment:
Q  1 tctttgtctgaacttgcttctttccaagcgctatttgttccttggcagctgttgttacctttgtgtttacctttctaggatacaatcttctacatacggt 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7654207 tctttgtctaaacttgcttctttccaagcgctatttgttccttggcagctgttgttacctttgtgtttacctttctaggatacaatcttctacatacggt 7654108  T
Q  101 gacgtcatgcccgatattctgtcagggagaacataaatcgggcatccattcgtaggccacgacaaccgggaaagcatattcttccctctcaacaacaatt 200  Q
    || |||||||||||||||||| ||| || |||| ||||| ||||||||||| ||||||||| |||||||||||||     ||||||||||| ||||||||    
T  7654107 gatgtcatgcccgatattctgacagtgacaacagaaatccggcatccattcataggccacggcaaccgggaaagc-----cttccctctcaccaacaatt 7654013  T
Q  201 tcatgaaaaatcttacaggagaaatccatatca 233  Q
    |||||||||||||||| ||||||||||||||||    
T  7654012 tcatgaaaaatcttacgggagaaatccatatca 7653980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0741 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0741
Description:

Target: scaffold0741; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 5594 - 5369
Alignment:
Q  8 ctgaacttgcttctttccaagcgctatttgttccttggcagctgttgttacctttgtgtttacctttctaggatacaatcttctacatacggtgacgtca 107  Q
    |||||||||||| || ||| ||||||||| ||| |||||||||||| |  |||||||| || ||||||||||||||| |||||| || || |||||||||    
T  5594 ctgaacttgctttttcccatgcgctattttttctttggcagctgttatgtcctttgtgatttcctttctaggatacagtcttctgcagacagtgacgtca 5495  T
Q  108 tgcccgatattctgtcagggagaacataaatcgggcatccattcgtaggccacgacaaccgggaaagcatattcttccctctcaacaacaatttcatgaa 207  Q
    || | ||||||||| ||| ||||||| || |||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  5494 tggctgatattctgacagtgagaacagaagtcgggcatccattcataggccacggcaaccgggaaagcatatccttccctctcaacaacaatttcatgaa 5395  T
Q  208 aaatcttacaggagaaatccatatca 233  Q
    ||||||||| ||||||||||||||||    
T  5394 aaatcttacgggagaaatccatatca 5369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 26176736 - 26176511
Alignment:
Q  8 ctgaacttgcttctttccaagcgctatttgttccttggcagctgttgttacctttgtgtttacctttctaggatacaatcttctacatacggtgacgtca 107  Q
    |||||||||||| || ||| ||||||||  ||| |||||||||||| |  |||||||| || ||||||||||||||| |||||| || || |||||||||    
T  26176736 ctgaacttgctttttcccatgcgctattatttctttggcagctgttatgtcctttgtgatttcctttctaggatacagtcttctgcagacagtgacgtca 26176637  T
Q  108 tgcccgatattctgtcagggagaacataaatcgggcatccattcgtaggccacgacaaccgggaaagcatattcttccctctcaacaacaatttcatgaa 207  Q
    || ||||||||||| ||| ||||||| || ||||| |||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  26176636 tggccgatattctgacagtgagaacagaagtcgggaatccattcataggccacgacaaccgggaaagcatatccttccctgtcaacaacaatttcatgaa 26176537  T
Q  208 aaatcttacaggagaaatccatatca 233  Q
    ||||||||| || |||||||||||||    
T  26176536 aaatcttacgggtgaaatccatatca 26176511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 8 - 233
Target Start/End: Original strand, 37635597 - 37635822
Alignment:
Q  8 ctgaacttgcttctttccaagcgctatttgttccttggcagctgttgttacctttgtgtttacctttctaggatacaatcttctacatacggtgacgtca 107  Q
    |||||||||||| || ||| ||| ||||| ||| |||||| ||||| |  |||||||| || ||||||||||||||| |||||| || || |||||||||    
T  37635597 ctgaacttgctttttcccatgcgttattttttctttggcaactgttatgtcctttgtgatttcctttctaggatacagtcttctgcagacagtgacgtca 37635696  T
Q  108 tgcccgatattctgtcagggagaacataaatcgggcatccattcgtaggccacgacaaccgggaaagcatattcttccctctcaacaacaatttcatgaa 207  Q
    || ||||||||||| ||| ||||||| || ||| |||||||||| ||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||    
T  37635697 tggccgatattctgacagtgagaacagaagtcgagcatccattcataggccacggcaaccaggaaaacatatccttccctctcaacaacaatttcatgaa 37635796  T
Q  208 aaatcttacaggagaaatccatatca 233  Q
    ||||||||| ||||||||||||||||    
T  37635797 aaatcttacgggagaaatccatatca 37635822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 41578 - 41353
Alignment:
Q  8 ctgaacttgcttctttccaagcgctatttgttccttggcagctgttgttacctttgtgtttacctttctaggatacaatcttctacatacggtgacgtca 107  Q
    |||||||||||| || ||| || |||||| ||| |||||||||||| |  |||| ||| || ||||||||||||||| |||| | || || |||||||||    
T  41578 ctgaacttgctttttcccatgcactattttttctttggcagctgttatgtccttcgtgatttcctttctaggatacagtcttttgcagacagtgacgtca 41479  T
Q  108 tgcccgatattctgtcagggagaacataaatcgggcatccattcgtaggccacgacaaccgggaaagcatattcttccctctcaacaacaatttcatgaa 207  Q
    ||  |||||||||| ||| |||| || || | |||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41478 tggacgatattctgacagtgagagcagaagttgggcatccattcatagaccacgacaaccgggaaagcatatccttccctctcaacaacaatttcatgaa 41379  T
Q  208 aaatcttacaggagaaatccatatca 233  Q
    ||||||||| ||||||||||||||||    
T  41378 aaatcttacgggagaaatccatatca 41353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 104 - 233
Target Start/End: Original strand, 16599892 - 16600021
Alignment:
Q  104 gtcatgcccgatattctgtcagggagaacataaatcgggcatccattcgtaggccacgacaaccgggaaagcatattcttccctctcaacaacaatttca 203  Q
    |||||||||||||||||| ||| ||||| | ||||| ||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  16599892 gtcatgcccgatattctgacagtgagaatagaaatccggcatccattcataggccacggcaaccgggaaagcatatccttccctctcaacaacaatttca 16599991  T
Q  204 tgaaaaatcttacaggagaaatccatatca 233  Q
    ||||||||||||| ||||||||||||||||    
T  16599992 tgaaaaatcttacgggagaaatccatatca 16600021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 100 - 232
Target Start/End: Original strand, 15219524 - 15219656
Alignment:
Q  100 tgacgtcatgcccgatattctgtcagggagaacataaatcgggcatccattcgtaggccacgacaaccgggaaagcatattcttccctctcaacaacaat 199  Q
    |||| ||||||||||||||||  ||| ||||||| |||||||||||||||| ||||||||| | || ||||||||||||| |||||||||| ||||||||    
T  15219524 tgacatcatgcccgatattcttacagtgagaacagaaatcgggcatccatttgtaggccacaaaaatcgggaaagcatatccttccctctcgacaacaat 15219623  T
Q  200 ttcatgaaaaatcttacaggagaaatccatatc 232  Q
    ||||||||||||||||| |||||| ||||||||    
T  15219624 ttcatgaaaaatcttacgggagaagtccatatc 15219656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 15200469 - 15200674
Alignment:
Q  17 cttctttccaagcgctatttgttccttggcagctgttgttacctttgtgtttacctttctaggatacaatcttctacatacggtgacgtcatgcccgata 116  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||            ||||| ||||||||||| || ||  |||| ||||||||||||    
T  15200469 cttcttcccaagcgctatttgttccttggcagctgttgtttccttt------------ctagggtacaatcttctgcagacaatgacatcatgcccgata 15200556  T
Q  117 t--tctgtcagggagaacataaatcgggcatccattcgtaggccacgacaaccgggaaagcatattcttccctctcaacaacaatttcatgaaaaatctt 214  Q
    |  |||  ||| ||||||| |||||||||||||||| ||||||||| | ||  |||||||||||| |||||||||| ||||||||||| |||||||||||    
T  15200557 tgatcttacagtgagaacagaaatcgggcatccatttgtaggccacaaaaattgggaaagcatatccttccctctcgacaacaatttcgtgaaaaatctt 15200656  T
Q  215 acaggagaaatccatatc 232  Q
    || |||||| ||||||||    
T  15200657 acgggagaagtccatatc 15200674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 233
Target Start/End: Original strand, 12398296 - 12398402
Alignment:
Q  127 gagaacataaatcgggcatccattcgtaggccacgacaaccgggaaagcatattcttccctctcaacaacaatttcatgaaaaatcttacaggagaaatc 226  Q
    ||||||| ||||| |||| |||||| ||||||||  |||||| ||| ||| |  ||||| | |||||||||||||||||||| | ||||| |||||||||    
T  12398296 gagaacagaaatcaggcaaccattcataggccaccgcaaccgtgaaggcaaacccttccttttcaacaacaatttcatgaaataacttacgggagaaatc 12398395  T
Q  227 catatca 233  Q
    |||||||    
T  12398396 catatca 12398402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University