View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5720_low_9 (Length: 237)
Name: NF5720_low_9
Description: NF5720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5720_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 6240751 - 6240972
Alignment:
| Q |
1 |
gagtttctggatatcagacaacattctaaaatcatctaatgtcacaaaatttatagcaacaccttttcttccaaatcgccctttgtggcatatacggtgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6240751 |
gagtttctggatatcagacaacattctaaaatcatctaatgtcacaaaatttatagcaacgccttttcttccaaatcgccctttgtggcatatacggtgg |
6240850 |
T |
|
| Q |
101 |
agatagttttcaggtagagttgggagatcatagtttatgaccagagacacttcctgcacatctaaaccgtagaccaaggggtcggtggtaatgagaatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6240851 |
agatagttttcaggtagagttgggagatcatagtttatgaccagagacacttcctgcacatctaaaccgtagaccaaggggtcggtggtaatgagaatct |
6240950 |
T |
|
| Q |
201 |
gaggagaaccagactggaaatt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
6240951 |
gaggagaaccagactggaaatt |
6240972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 197
Target Start/End: Original strand, 6249158 - 6249351
Alignment:
| Q |
4 |
tttctggatatcagacaacattctaaaatcatctaatgtcacaaaatttatagcaacaccttttcttccaaatcgccctttgtggcatatacggtggaga |
103 |
Q |
| |
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|||||| ||||||| |||||||||| ||| ||| ||| ||||| || || | |||||||||||||||||||||||| | | | ||||||||||||| |
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| T |
6249158 |
tttctgaatatcagccaacattctagcatcttctcctgttacaaagttaattgaaacaccttttcttccaaatcgcccactacgacctatacggtggaga |
6249257 |
T |
|
| Q |
104 |
tagttttcaggtagagttgggagatcatagtttatgaccagagacacttcctgcacatctaaaccgtagaccaaggggtcggtggtaatgagaa |
197 |
Q |
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| T |
6249258 |
tagttttcaggttgagttggtagatcatagtttatgaccaaagatacctgctgcacatcgataccacgggccaagaggtcggtggttatgagaa |
6249351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 101 - 220
Target Start/End: Original strand, 6233753 - 6233872
Alignment:
| Q |
101 |
agatagttttcaggtagagttgggagatcatagtttatgaccagagacacttcctgcacatctaaaccgtagaccaaggggtcggtggtaatgagaatct |
200 |
Q |
| |
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|||||||||||||| | |||||||||||||||||||| |||||||||| ||| |||| |||| ||| | || | |||||||||||||||||||| | |
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| T |
6233753 |
agatagttttcaggcacagttgggagatcatagtttacgaccagagacgctttatgcaaatctgtaccacaaacgagggggtcggtggtaatgagaactt |
6233852 |
T |
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| Q |
201 |
gaggagaaccagactggaaa |
220 |
Q |
| |
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||||||| ||||||| |||| |
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| T |
6233853 |
gaggagagccagactcgaaa |
6233872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 217
Target Start/End: Original strand, 6226485 - 6226611
Alignment:
| Q |
91 |
tatacggtggagatagttttcaggtagagttgggagatcatagtttatgaccagagacacttcctgcacatctaaaccgtagaccaaggggtcggtggta |
190 |
Q |
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||||||||| |||||||||||||| | |||||||||||||||||||| || ||||||| ||| ||||||||| ||| | | | ||||||||||||| |
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| T |
6226485 |
tatacggtgaagatagttttcaggcacagttgggagatcatagtttacgatcagagacgctttatgcacatctgcaccacaaagctgggggtcggtggta |
6226584 |
T |
|
| Q |
191 |
atgagaatctgaggagaaccagactgg |
217 |
Q |
| |
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||||||| |||||||| | ||||||| |
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|
| T |
6226585 |
atgagaacttgaggagagctagactgg |
6226611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 162
Target Start/End: Complemental strand, 42719155 - 42718998
Alignment:
| Q |
5 |
ttctggatatcagacaacattctaaaatcatctaatgtcacaaaatttatagcaacaccttttcttccaaatcgccctttgtggcatatacggtggagat |
104 |
Q |
| |
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||||| ||||||| || |||||| ||| || ||||| ||||| || ||||||||||||||||||||||| ||||| | | | ||||| ||||||| |
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| T |
42719155 |
ttctgaatatcagccagcattcttgcatcttccaatgtgacaaagttgatagcaacaccttttcttccaaaacgcccacttcgcccaatacgatggagat |
42719056 |
T |
|
| Q |
105 |
agttttcaggtagagttgggagatcatagtttatgaccagagacacttcctgcacatc |
162 |
Q |
| |
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||||||||||| | || || | |||||| ||||||||||||||||||| ||| ||||| |
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|
| T |
42719055 |
agttttcaggttgggtaggcaaatcataatttatgaccagagacacttgctgaacatc |
42718998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 17545621 - 17545505
Alignment:
| Q |
101 |
agatagttttcaggtagagttgggagatcatagtttatgaccagagacacttcctgcacatctaaaccgtagaccaaggggtcggtggtaatgagaatct |
200 |
Q |
| |
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|||||||||||||| || ||||||||||||||||| || |||||| |||| ||||||||| ||| | ||||||||||| ||||||||||||| | |
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| T |
17545621 |
agatagttttcaggcgcagctgggagatcatagtttacgatcagagatactttatgcacatctgtaccacaaaccaaggggtctgtggtaatgagaacat |
17545522 |
T |
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| Q |
201 |
gaggagaaccagactgg |
217 |
Q |
| |
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||||||| ||||||||| |
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| T |
17545521 |
gaggagagccagactgg |
17545505 |
T |
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