View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5721-Insertion-10 (Length: 257)
Name: NF5721-Insertion-10
Description: NF5721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5721-Insertion-10 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 2e-90; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 2e-90
Query Start/End: Original strand, 78 - 255
Target Start/End: Complemental strand, 2159479 - 2159302
Alignment:
| Q |
78 |
atcattttgatcgtttggagcatgattattgcatcmctttatcattgctaattggtaagtgatctctagtgaagatatagtattcaaaaggaattaagaa |
177 |
Q |
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| T |
2159479 |
atcattttgatcgtttggagcatgattattgcatcactttatcattgctaattggtaagtcatctctagtgaagatatagtattcaaaaggaattaagaa |
2159380 |
T |
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| Q |
178 |
accatagcagttatttgggtcatattcctattttacactatgaaatgcatggtgtacaataagcattcataattttgt |
255 |
Q |
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| T |
2159379 |
accatagcaattatttgggtcatattcctattttacactatgaaatgcatggtgtacaataagcattcataattttgt |
2159302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 2159592 - 2159515
Alignment:
| Q |
8 |
aaaccaccctaaaatctaaaagcagcagcatctttggaatcttattcatacttctgaaaacaagtgcaatatcatttt |
85 |
Q |
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| T |
2159592 |
aaaccaccctaaaatctaaaaacagcagcatctttggaatcttattcatacttctgaaaacaagtgcaatatcatttt |
2159515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 2162112 - 2162058
Alignment:
| Q |
30 |
cagcagcatctttggaatcttattcatacttctgaaaacaagtgcaatatcattt |
84 |
Q |
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| T |
2162112 |
cagcagcatctttgggatcttattcatacttcttctatcaagtgcaatatcattt |
2162058 |
T |
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