View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5721-Insertion-4 (Length: 631)
Name: NF5721-Insertion-4
Description: NF5721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5721-Insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 184 - 627
Target Start/End: Complemental strand, 43317134 - 43316685
Alignment:
| Q |
184 |
gtactactgtataaagatgcattttctcatgctagtacaagtgatgcttgacttgactaccaagttttgatt------------cataatcaatcaacct |
271 |
Q |
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| T |
43317134 |
gtactactgtataaagatgcattttctcatgctagtacaagtgatgcttgacttgactaccaagttttgattaatatttttattcataatcaatcaacct |
43317035 |
T |
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| Q |
272 |
tcacagtagccagtagccaccgtttgagaattaaataattaatctcaactaattattttttaaaacaatagggaggatcataaccaaagcaataattagg |
371 |
Q |
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| T |
43317034 |
tcacagtagccagtagccaccatttgagaattaattaattaatctcaactaattattttttaaaacaatagggaggattataaccaaagcaataattagg |
43316935 |
T |
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| Q |
372 |
atcaggagtagtaaaatggcaaaacatgtccatttacgggtattcttttgatttttcctagcaacatgtaattgttgtactcctcctctaacatacgaat |
471 |
Q |
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| T |
43316934 |
a------gtagtaaaatggcaaaacatgtccattcacgggtattcttttgatttttcctagcaacatgtaattgttgtactcctcctctaacatacgaat |
43316841 |
T |
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| Q |
472 |
ttgctcgcatcatttggctctcaatgtcattcaactcttcaccttgggattggaccaaaactgccatgtccagaaacacttgatgcagctcttttagatt |
571 |
Q |
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| T |
43316840 |
ttgctcgcatcatttggctctcaatgtcattcaactcttcaccttgggattggaccaaaactgccatgtccagaaacacttgatgcagctcttttagatt |
43316741 |
T |
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| Q |
572 |
tctctctatctctttcactgcaccatgtctctcctcaatctcctgtattgtctcca |
627 |
Q |
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| T |
43316740 |
tctctctatctctttcactgcaccatgtctctcctcaatctcctgtattttctcca |
43316685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 43317305 - 43317194
Alignment:
| Q |
8 |
tagagagcgtaaattgtgcttgatatatatgcctaattcatgcsccgtcagataattctagaaacsaagaatccaaaatatttgaacaaattttcttttg |
107 |
Q |
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| T |
43317305 |
tagagagcataaatcgtgcttgatatatatgcctaattcatgcgccgtcagctaattctagaaacgaagaatctaaaatctttgaacaaattttcttttg |
43317206 |
T |
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| Q |
108 |
tggataagtctt |
119 |
Q |
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| T |
43317205 |
ttgataagtctt |
43317194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 387 - 591
Target Start/End: Original strand, 24710060 - 24710264
Alignment:
| Q |
387 |
atggcaaaacatgtccatttacgggtattcttttgatttttcctagcaacatgtaattgttgtactcctcctctaacatacgaatttgctcgcatcattt |
486 |
Q |
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| T |
24710060 |
atggcaatacaagtccattttctggtattcatttggtgcttcctagcaacatgcaattgttggaccccacctctaacatacgaattagcacgtgccacgt |
24710159 |
T |
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| Q |
487 |
ggctctcaatgtcattcaactcttcaccttgggattggaccaaaactgccatgtccagaaacacttgatgcagctcttttagatttctctctatctcttt |
586 |
Q |
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| T |
24710160 |
ggctttcaatattatccaattgttcaccttgtgattgaaccaaaacagacatgtccataaacacttggtgaagctccattagatttctttctatctcttt |
24710259 |
T |
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| Q |
587 |
cactg |
591 |
Q |
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| T |
24710260 |
cactg |
24710264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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