View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5721-Insertion-8 (Length: 443)
Name: NF5721-Insertion-8
Description: NF5721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5721-Insertion-8 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 376387 - 376150
Alignment:
| Q |
7 |
aaaatgaatgattaaggacgttacaacaatcctcatattgaaatccttaacaaatctatcactaaaatctccatcatcagcaaagcttcttctgcatggc |
106 |
Q |
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| T |
376387 |
aaaatgaatgattaaggacgttacaacaatcctcatattgaaatccttaacaaatctatcactaaaatctccatcatcagcaaagcttcttctgcatggc |
376288 |
T |
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| Q |
107 |
agttctttccttctcctgcaaaaacatgtccaatttggatataaattaagcttttcaatttcattgtagtaatcattggattaaatttaaacgaaacaaa |
206 |
Q |
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| T |
376287 |
agttctttccttctcctgcaaaaacatgtccaatttggatataaattaagcttttcaatttcattgtagtaatcattggattaaatttaaacgaaaca-- |
376190 |
T |
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| Q |
207 |
ttaaagaaattaattaattaggagagttgggaagaaaacata |
248 |
Q |
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| T |
376189 |
--aaagaaattaattaattaggagagttgagaagaaaacata |
376150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 267 - 439
Target Start/End: Complemental strand, 376125 - 375953
Alignment:
| Q |
267 |
ccataaaagggtactggtgcttgattagttggctgctttagagggcaagtggaaataggaagcacagggagattttggcaattgcacatttcaatcatat |
366 |
Q |
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| T |
376125 |
ccataaaagggtactggtgcttgattagttggctgctttagagggcaagtggaaataggaagcacagggagattttggcaattgcacatttcaatcatat |
376026 |
T |
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| Q |
367 |
atccatctggatcatgaaagaacaattgatcaacctgaattccaccatcctccacaactgctgttttatactc |
439 |
Q |
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| T |
376025 |
atccatctggatcatgaaagaacaattgatcaaccttaattccaccatcctccacaactgctgttttatactc |
375953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 410
Target Start/End: Original strand, 44544811 - 44544876
Alignment:
| Q |
345 |
caattgcacatttcaatcatatatccatctggatcatgaaagaacaattgatcaacctgaattcca |
410 |
Q |
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| T |
44544811 |
caattgcatatttcaatcataaatccatctgggtcatgaaaaaacaattgatccacttgaattcca |
44544876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 410
Target Start/End: Original strand, 44555453 - 44555518
Alignment:
| Q |
345 |
caattgcacatttcaatcatatatccatctggatcatgaaagaacaattgatcaacctgaattcca |
410 |
Q |
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| T |
44555453 |
caattgcatatttcaatcataaatccatctgggtcatgaaaaaacaattgatccacttgaattcca |
44555518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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