View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5721-Insertion-9 (Length: 337)
Name: NF5721-Insertion-9
Description: NF5721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5721-Insertion-9 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 8 - 337
Target Start/End: Original strand, 1049646 - 1049975
Alignment:
| Q |
8 |
aaaccctgcaaccttcttataataattagcacaaaatttctttgacannnnnnnggatatgtcaatgctatgtaacaaatcccaatgattcttttcaaca |
107 |
Q |
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| T |
1049646 |
aaaccctgcaaccttcttataataattaccacaaaatttctttgacatttttttggatatgtcaatgctatgcaacaaatcccaatgattcttttcaaca |
1049745 |
T |
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| Q |
108 |
agttcccaaactctcaaattattttgtccaatatcagctatcctcaaacaaccacaagagattccaaggaaaccaaaactcattatgttcattgaatcag |
207 |
Q |
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| T |
1049746 |
agttcccaaactctcaaattattttgtccaatatcagctatcctcaaacaaccacaagagattccaaggaaaccaaaactcattatgttcattgaatcag |
1049845 |
T |
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| Q |
208 |
cttctaagggataattaagggtatcctttgtgtttgtataaggatcaaacacaaaaatgcttgtcctccccatgaaatacaagcttccaccataggaaaa |
307 |
Q |
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| T |
1049846 |
cttctaagggataattaagggtatcccttgtgtttgtataaggatcaaacacaaaaatgcttgtcctccccatgaaatacaagcttccaccataggaaaa |
1049945 |
T |
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| Q |
308 |
acttagtagccaatgaggagcaaaagcgaa |
337 |
Q |
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| T |
1049946 |
acttagtagccaatgaggagcaaaagcgaa |
1049975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 63 - 337
Target Start/End: Original strand, 42875198 - 42875472
Alignment:
| Q |
63 |
gatatgtcaatgctatgtaacaaatcccaatgattcttttcaacaagttcccaaactctcaaattattttgtccaatatcagctatcctcaaacaaccac |
162 |
Q |
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| T |
42875198 |
gatatatcaatacaatgcaacaaatcccactgattcttttcaacatgttcccaaactctcaaatcatgttgtctaatatcagctatcctcaaacgactac |
42875297 |
T |
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| Q |
163 |
aagagattccaaggaaaccaaaactcattatgttcattgaatcagcttctaagggataattaagggtatcctttgtgtttgtataaggatcaaacacaaa |
262 |
Q |
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| T |
42875298 |
aagagatcccgagaaacccacaactcactatattcatcgcatcggcttccgatggataattaatagtgtacctttttcttgaataaggatcaaacacaaa |
42875397 |
T |
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| Q |
263 |
aatgcttgtcctccccatgaaatacaagcttccaccataggaaaaacttagtagccaatgaggagcaaaagcgaa |
337 |
Q |
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| T |
42875398 |
aatgtttgccctccccatgaaatacagctttccacagtatgaaaaactcagaagccaatgaggagcaaaagcgaa |
42875472 |
T |
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