View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5721_high_11 (Length: 384)
Name: NF5721_high_11
Description: NF5721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5721_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 173 - 371
Target Start/End: Complemental strand, 8540239 - 8540042
Alignment:
| Q |
173 |
ttcctaaatagttactttgttcttctagcctaaatgttttctatggtggtcgacttcgccactttcttctgtttgcggtgtgcattataattcattactt |
272 |
Q |
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| T |
8540239 |
ttcctaagtacttacttt-ttcttctagcctaaatgttttctatggtggtcgacttcgccactttcttctgtttggagtgtgcgttataattcattactt |
8540141 |
T |
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| Q |
273 |
ttctcttttctcgttgctcagtgcttagttaccaacttaattgttctaataaattcctaatttgtgttctcatttgtagattggaaattgttgcaactc |
371 |
Q |
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| T |
8540140 |
ttctcttttgtctttgctcagtgcttagttaccaactcaattgttctaataaattcctaatttgtgttctcatttgtagattggaaattgttgcaactc |
8540042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 8540454 - 8540358
Alignment:
| Q |
19 |
atacactaccatatcaattaaatactccatcacattaaccaaaaataagaacttcattctatctcgtccttcttcaactgttgccctcgcatacaca |
115 |
Q |
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| T |
8540454 |
atacaccaccatatcaattaaaaactccaccacatcaaccaaaaataaaaacttcattctatcttgtccttcttcaaccgttgccctcgcatacaca |
8540358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 195 - 290
Target Start/End: Complemental strand, 8588470 - 8588375
Alignment:
| Q |
195 |
ttctagcctaaatgttttctatggtggtcgacttcgccactttcttctgtttgcggtgtgcattataattcattacttttctcttttctcgttgct |
290 |
Q |
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| T |
8588470 |
ttctagcctaaatgttttctacggtggtcgtcttcgccactttcttcggtttgtggtgtgcattatacttcatcacttctctctttgctcattgct |
8588375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 294 - 370
Target Start/End: Complemental strand, 8568997 - 8568921
Alignment:
| Q |
294 |
tgcttagttaccaacttaattgttctaataaattcctaatttgtgttctcatttgtagattggaaattgttgcaact |
370 |
Q |
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| T |
8568997 |
tgcttagttaccaactcaattgttctaataaaatcgtaatttgtattcccatttttagatcggaaaatgttgcaact |
8568921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 8569038 - 8568997
Alignment:
| Q |
239 |
ttctgtttgcggtgtgcattataattcattacttttctcttt |
280 |
Q |
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| T |
8569038 |
ttctgtttgcggagtgcatcatacttcattacttttctcttt |
8568997 |
T |
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