View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5721_high_27 (Length: 242)
Name: NF5721_high_27
Description: NF5721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5721_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 43317396 - 43317319
Alignment:
| Q |
127 |
catcattctttatctcgaaatatatagatgcccatccccaccaccaaccatgctttattgtaaaaatccaaatccagt |
204 |
Q |
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| T |
43317396 |
catcattctttatctcgaaatacatagaagcccatccccaccaccaaccatgctttattgtaaaaatccaaatccagt |
43317319 |
T |
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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43317729 - 43317692
Alignment:
| Q |
1 |
tcaattacagtttgtaaactacagcattgtttgaaaag |
38 |
Q |
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| T |
43317729 |
tcaattacagtttgtaaactacagcattgtttgaaaag |
43317692 |
T |
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