View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5721_low_1 (Length: 929)
Name: NF5721_low_1
Description: NF5721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5721_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 594; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 1 - 726
Target Start/End: Complemental strand, 54307416 - 54306688
Alignment:
| Q |
1 |
catttctgtacattcatttaaaagaaatatggacataacaaactactccatccattccacaatataatttattttaaccaaaaatattgtcatgtcattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54307416 |
catttctgtacattcatttaaaagaaaaatggacataacaaactactccatccattccacaatataatttattttaaccaaaaatattgtcatgtcattt |
54307317 |
T |
|
| Q |
101 |
tatattatcaatgaaattttaatttttgttctttatataaagatatcggttgaacaagtgaccaactcatgtggttaacgagctctccctggaagtacga |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
54307316 |
tatattatcaaagaaattttaatttttgttctttatataaatatattggttgaacaagtgaccaactcatgtggttaacgagctctccctggaaagaaga |
54307217 |
T |
|
| Q |
201 |
aacaattcttaattaagcacaagaaatctactattcttaacaaagcaatgcgagtatctacatccaagtatcaaatgctttactaagtaaaccataattt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54307216 |
aacaattcttaattaagcacaagaaatctactattcttaacaaagcaatgcgagtatctacatccaagtatcaaatgctttactaagtaaaccataattt |
54307117 |
T |
|
| Q |
301 |
acatggatagtaaaaagcaatnnnnnnnnnnnnn-tcaagaatagagagctaaagtacccacaannnnnnnnacaccggctgcacaaaa-ttcttaatca |
398 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
54307116 |
acatggatagtaaaaagcaataaaaaaaaaataaatcaagaataaagagctaaagtacccacaattttttttacaccggctgcacaaaaattcttaatca |
54307017 |
T |
|
| Q |
399 |
aatcctagtgcttcccatgataaaaat-gaactatacctacttggattttctgaaattcaaacatgggattaatcttctgacttgttaaacaagagtttg |
497 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
54307016 |
aatcctagtgcttcccatgataaaaattgaactatacctacttggattttctgaaattcaaacatgggattaatcttctgacatgttaaacaagagtttg |
54306917 |
T |
|
| Q |
498 |
gaagagatgcaactcgaggaagattaaagatcaaatctccaaatcagtccttcctgaaccagcaatccataagccacttaattttaaaagcgacgcttca |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
54306916 |
aaagagatgcaactcgaggaagattaaagatcaaatctccaaatcagtccttcctgaaccagcaatccatcagccacttaattttaaaagcgacgcttca |
54306817 |
T |
|
| Q |
598 |
tcctttcgttgataaattttcaaacattaatgagcaagcaaagatgaaatgttcaaacgaaaaatgtgcattaaaatttaagcatgaagtacaattgaat |
697 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54306816 |
tactttcgttgataaattttcaaacattaatgagcaagcaaagatgaaatgttcaaacgaaaaatgtgcattaaaatttaagcatgaagtacaattgaat |
54306717 |
T |
|
| Q |
698 |
accccttaaagttccaagttcttatagta |
726 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
54306716 |
accccttaaagttccaagttcttatagta |
54306688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 780 - 915
Target Start/End: Complemental strand, 54306701 - 54306566
Alignment:
| Q |
780 |
aagttcttatagtacctgaataaaggaaaggtggttcgcatgacacagtaatagctgtgctcaatcataaatgacggtgacagggatggatgaggatatt |
879 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
54306701 |
aagttcttatagtacctgaataaaggaaaggtgcttcgcatgacacagtaatagctgtgctcaatcataaatgacggtgacagggatggatgagaatatt |
54306602 |
T |
|
| Q |
880 |
tccatgttttgaaaacgagacgttgttgatcatttt |
915 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
54306601 |
tccatgttttgaaaacgagacgttgttgatcatttt |
54306566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 218 - 556
Target Start/End: Complemental strand, 54301775 - 54301426
Alignment:
| Q |
218 |
cacaagaaatctactattcttaacaaagcaatgcgagtatctacatccaagtatcaaatgctttactaagtaaaccataatttacatggatagtaaaaa- |
316 |
Q |
| |
|
||||||||| ||| || |||||||||||||| |||||| |||||||||||||| |||| | ||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
54301775 |
cacaagaaaagtaccatccttaacaaagcaatatgagtatttacatccaagtatccaatgttctactaagtaaaccataatttacacagatagcaaaaaa |
54301676 |
T |
|
| Q |
317 |
gcaatnnnnnnnnnnnnntcaagaatagagagctaaagtacccacaannnnnnnnacaccggctgcacaaa-attcttaatcaaatcctagtgcttccca |
415 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||| |||| |||||||| || ||||||||| |||||||| ||||||||| |
|
|
| T |
54301675 |
gcaataaaaataaaaag--caagaatagagagctaaagtacctacaattttttt-acacgggctgcaccaacattcttaattaaatcctaatgcttccca |
54301579 |
T |
|
| Q |
416 |
--------tgataaaaat-gaactatacctactt-ggattttctgaaat-tcaaacatgggattaatcttctgacttgttaaacaagag-tttggaagag |
503 |
Q |
| |
|
|||||||||| ||||||||| ||||| |||| ||||||||| |||||||| |||||||||| |||| |||||||||||| |||||||||| |
|
|
| T |
54301578 |
agttcccatgataaaaatcgaactatacgtactttggatattctgaaatgtcaaacatttgattaatcttgtgacatgttaaacaagaactttggaagag |
54301479 |
T |
|
| Q |
504 |
atgcaactcgaggaagattaaagatcaaatctccaaatcagtccttcctgaac |
556 |
Q |
| |
|
|||||| ||||||||||||||| | ||||||||||||| |||||||||||||| |
|
|
| T |
54301478 |
atgcaattcgaggaagattaaaaagcaaatctccaaatgagtccttcctgaac |
54301426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 606 - 678
Target Start/End: Complemental strand, 54288153 - 54288082
Alignment:
| Q |
606 |
ttgataaattttcaaacattaatgagcaagcaaagatgaaatgttcaaacgaaaaatgtgcattaaaatttaa |
678 |
Q |
| |
|
||||||||||||||| |||||| | |||||||||| |||||| ||||| |||||| |||||||||||||||| |
|
|
| T |
54288153 |
ttgataaattttcaatcattaaccaacaagcaaagaagaaatgctcaaaagaaaaa-gtgcattaaaatttaa |
54288082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 462 - 552
Target Start/End: Complemental strand, 54289134 - 54289043
Alignment:
| Q |
462 |
tgggattaatcttctgacttgttaaacaagagttt-ggaagagatgcaactcgaggaagattaaagatcaaatctccaaatcagtccttcct |
552 |
Q |
| |
|
||||| ||||||||||| ||| |||||||| ||| ||||||||||||| |||||||||| ||| | ||||||||||||| |||| ||||| |
|
|
| T |
54289134 |
tgggactaatcttctgatatgtcaaacaagaattttggaagagatgcaattcgaggaagactaagaagcaaatctccaaatgagtctttcct |
54289043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 141
Target Start/End: Complemental strand, 54302070 - 54302035
Alignment:
| Q |
106 |
tatcaatgaaattttaatttttgttctttatataaa |
141 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
54302070 |
tatcaatgaaattttattttttgttctttatataaa |
54302035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University