View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5721_low_10 (Length: 398)
Name: NF5721_low_10
Description: NF5721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5721_low_10 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0065 (1 HSPs) |
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| [»] scaffold0741 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 27540009 - 27539612
Alignment:
| Q |
1 |
acaacccttcaaggaccggctcgtccctagcttttggaacaacaaatgacactactttcagcaccggatttt-gtggaagcggaaagggaaaccaatgat |
99 |
Q |
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||||||||||| ||||||||| |||||||||||||| |||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||| | |
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| T |
27540009 |
acaacccttcagagaccggctcttccctagcttttggcacaacaaatgacactactc-cagcaccgaatttttgtggaagcagaaagggaaaccaatggt |
27539911 |
T |
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| Q |
100 |
gaaattcaacaagatatacacgtttctgatcaagaaacagaagcagcaacgattcctctgcaaattgaattacatgatgcacacgaggagttagctcttg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27539910 |
gaaattcaacaagatatacacgtttctgatcaagaaacataagcagcaacgattcctttgcaaattgaattacatgatgcacacgaggagttagctcttg |
27539811 |
T |
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| Q |
200 |
tcagatcagaggcagtgcccactactttaccgactcctatggggagccataaagaaacagaaacaacaactgtttcattgcaaattgaaacaattcagaa |
299 |
Q |
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| T |
27539810 |
tcagatcagaggcagtgcccactgctttaccgactcctatggggatccataaagaaacagaaacaacaacggcttcattgcaaattgaaacaattcagaa |
27539711 |
T |
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| Q |
300 |
ccaaggggaagcaattctgatccaagaggaaacacatgatgcgcatgagagagtagttcctgtcatatcagaggctgtgcccgcagttttaccgactcc |
398 |
Q |
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| T |
27539710 |
ccaaggggaagcaattccgatccaagaggaaacacatgatgcgcaggagggagtagttcctgtcagatcagaggcagtgcccgcagttttaccgactcc |
27539612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 16599862 - 16599466
Alignment:
| Q |
1 |
acaacccttcaaggaccggctcgtccctagcttttggaacaacaaatgacactactttcagcaccggattttgtggaagcggaaagggaaaccaatgatg |
100 |
Q |
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|||| |||||| ||| |||||| |||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| |||||||||||| ||||||| |
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| T |
16599862 |
acaagccttcagggatcggctcttccctagcttttggcgcaacaaatgacactactt-cagcatcggattttgtggaagtggaaagggaaacaaatgatg |
16599764 |
T |
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| Q |
101 |
aaattcaacaagatatacacgtttctgatcaagaaacagaagcagcaacgattcctctgcaaattgaattacatgatgcacacgaggagttagctcttgt |
200 |
Q |
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| T |
16599763 |
acattcaacaagatatacacgtttctgaccaagaaacagaagcagcaacaattcctctgcaaattgaattacatgatgcgcacgaggagttagctcttat |
16599664 |
T |
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| Q |
201 |
cagatcagaggcagtgcccactactttaccgactcctatggggagccataaagaaacagaaacaacaactgtttcattgcaaattgaaacaattcagaac |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
16599663 |
cagatcagaggcagtgcccactgctttaccgactcctatggggagccataaagaaacagaaacaacaacgacttcattgcaaattgaaacaattcagaac |
16599564 |
T |
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| Q |
301 |
caaggggaagcaattctgatccaagaggaaacacatgatgcgcatgagagagtagttcctgtcatatcagaggctgtgcccgcagttttaccgactcc |
398 |
Q |
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| T |
16599563 |
caaggggaagcaattccgatccaagaggaaacacatgatgctcaggagggagtaattcctgtcagatcagaggcaatgccctcagttttaccgactcc |
16599466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 245 - 398
Target Start/End: Complemental strand, 15200305 - 15200152
Alignment:
| Q |
245 |
gccataaagaaacagaaacaacaactgtttcattgcaaattgaaacaattcagaaccaaggggaagcaattctgatccaagaggaaacacatgatgcgca |
344 |
Q |
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||||| |||||| ||||||| |||| | ||||||| |||||||| || |||| ||||||||||||||||||| | ||||||| |||| ||| |||||||| |
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| T |
15200305 |
gccatcaagaaatagaaacagcaacagcttcattgaaaattgaagcatttcaaaaccaaggggaagcaattccggtccaagatgaaatacaggatgcgca |
15200206 |
T |
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| Q |
345 |
tgagagagtagttcctgtcatatcagaggctgtgcccgcagttttaccgactcc |
398 |
Q |
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||| |||||||||||||| |||||||| || | ||||||||||||||||| |
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| T |
15200205 |
agaggaagtagttcctgtcagatcagaggtagtagctgcagttttaccgactcc |
15200152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 245 - 398
Target Start/End: Complemental strand, 15219390 - 15219237
Alignment:
| Q |
245 |
gccataaagaaacagaaacaacaactgtttcattgcaaattgaaacaattcagaaccaaggggaagcaattctgatccaagaggaaacacatgatgcgca |
344 |
Q |
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||||| |||||| ||||||| ||| | |||||||||||||||| || |||||||| ||||||||||||||| | ||||||| |||| ||| ||||||| |
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| T |
15219390 |
gccatcaagaaatagaaacagcaatagcttcattgcaaattgaagcatttcagaactaaggggaagcaattccggtccaagatgaaatacaggatgcgcg |
15219291 |
T |
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| Q |
345 |
tgagagagtagttcctgtcatatcagaggctgtgcccgcagttttaccgactcc |
398 |
Q |
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||| |||||||||||||| |||| |||| |||| ||||||||||| ||||| |
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| T |
15219290 |
agaggaagtagttcctgtcagatcataggcagtgcttgcagttttaccaactcc |
15219237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 7654232 - 7654309
Alignment:
| Q |
1 |
acaacccttcaaggaccggctcgtccctagcttttggaacaacaaatgacactactttcagcaccggattttgtggaag |
79 |
Q |
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| T |
7654232 |
acaacccttcagggatcgactcttccctggcttttggcgcaacaaatgacactac-ttcagcaccggattttgtggaag |
7654309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 168
Target Start/End: Original strand, 41689 - 41776
Alignment:
| Q |
81 |
ggaaagggaaaccaatgatgaaattcaacaagatatacacgtttctgatcaagaaacagaagcagcaacgattcctctgcaaattgaa |
168 |
Q |
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|||||||||| |||||||| ||||| |||||| | | ||| |||| ||||||||||||||| || |||||||||||||||||||| |
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| T |
41689 |
ggaaagggaagtaaatgatgatattcagcaagatcttcgtgttactgagcaagaaacagaagcaacagcgattcctctgcaaattgaa |
41776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0741 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0741
Description:
Target: scaffold0741; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 5665 - 5793
Alignment:
| Q |
40 |
caacaaatgacactactttcagcaccggattttgtggaagcggaaagggaaaccaatgatgaaattcaacaagatatacacgtttctgatcaagaaacag |
139 |
Q |
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||||| ||||||||| || |||||||| |||| | ||| |||||||||| |||||||| |||| |||||||| | ||| |||| |||||||||| |
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| T |
5665 |
caacacatgacactaatt-cagcaccgatttttatagaaaaggaaagggaagtaaatgatgatcttcagcaagatattcgtgttactgagcaagaaacag |
5763 |
T |
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| Q |
140 |
aagcagcaacgattcctctgcaaattgaat |
169 |
Q |
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||| | || | ||||||||||||||||||| |
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| T |
5764 |
aagtaacagcaattcctctgcaaattgaat |
5793 |
T |
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