View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5721_low_13 (Length: 380)
Name: NF5721_low_13
Description: NF5721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5721_low_13 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 17 - 380
Target Start/End: Complemental strand, 27922478 - 27922114
Alignment:
| Q |
17 |
attttggactaagcaaagatatttgtaattgaaaacnnnnnnnnngaatgatgatttgaatcatgttcgagaaaatgaatcacaatgttgaaagttcggg |
116 |
Q |
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| T |
27922478 |
attttggactaagcaaagatatttgtaattgaaaactttttttt-gaatgatgatttgaatcatgttcgagaaaatgaatcacaatgttgaaagttcggg |
27922380 |
T |
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| Q |
117 |
tgaatgcaccaagctctagcttgctggtaaattctatttataccttaaattttatcgctgtctatatgtgcgtctcttcataaccaaacataaccgaatc |
216 |
Q |
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| T |
27922379 |
tgaatgcaccaagctctagcttgctagtaaattctaattataccttaaattttatcgctgtctatatgtgtgtctcttcataaccaaacacaaccgaatc |
27922280 |
T |
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| Q |
217 |
ctattgttaataatactcaacataccaaaataaataaacaagttgtggaataaaaactatattacgaaagcagagactatttccttc--tgatttttcca |
314 |
Q |
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| T |
27922279 |
ctattgttaataatactcaacataccaaaataaataaacaagttgtggaataaaaactatattacgaaagcacagactatttccttctttgttttttcca |
27922180 |
T |
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| Q |
315 |
aaaagaagggactatttcattaaggtatcaaacaaaatgaaatgaacaatatatgctcatatggat |
380 |
Q |
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| T |
27922179 |
aaaagcagggactatttcattaaggtatcaaacaaaatgaaatgaacaatatatgctcatatggat |
27922114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 27915604 - 27915521
Alignment:
| Q |
175 |
tgtctatatgtgcgtctcttcataaccaaacataaccgaatcctattgtta-----ataatactcaacataccaaaataaataaa |
254 |
Q |
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| T |
27915604 |
tgtctctatgtgtgtctcttcataaccaaacataaccg-agcctcttgttaataatataatattcaacataccaaaataaataaa |
27915521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 355
Target Start/End: Complemental strand, 27915492 - 27915452
Alignment:
| Q |
315 |
aaaagaagggactatttcattaaggtatcaaacaaaatgaa |
355 |
Q |
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| T |
27915492 |
aaaagcagggactttttcactaaggtatcaaacaaaatgaa |
27915452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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