View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5721_low_14 (Length: 376)
Name: NF5721_low_14
Description: NF5721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5721_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 64 - 367
Target Start/End: Original strand, 32306386 - 32306689
Alignment:
| Q |
64 |
ctacacaagatatatagcaataatagcatcaaggttgaaatctatctactaacctaactctctcaaaccaatcaaaggctcatggtatgtttgcaagttg |
163 |
Q |
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| T |
32306386 |
ctacacaagatatatagcaataatagcatcaaggttgaaatctatctactaacctaactctctcaaaccaatcaaaggctcatggtatgtttgcaagttg |
32306485 |
T |
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| Q |
164 |
acctttgaggagttttagagagaaacgttattgagggtgtctaaatcttatcatttataattgttgaaagaatgacataatatatagtatcttgcaatat |
263 |
Q |
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| T |
32306486 |
acctttgaggagttttagagagaaacgttattgagggtgtctaaatcttatcatttataattgttgaaagaatgacataatatatagtatcttacaatat |
32306585 |
T |
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| Q |
264 |
tgcaaccacttctctaacattttataatttctttaatttaaaaataaaaagaataaatcttcccctgccatattccctcaaaaacccaactcccaaaata |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32306586 |
tgcaaccacttctctaacattttataatttctttaatttaaaaataaaaagaataaatcttcccctgccatattccatcaaaaacccaactcccaaaata |
32306685 |
T |
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| Q |
364 |
gcca |
367 |
Q |
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|||| |
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| T |
32306686 |
gcca |
32306689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 32306326 - 32306369
Alignment:
| Q |
16 |
atcgacgtacgtggatataattttccaatttgaattaatcaatgatat |
63 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32306326 |
atcgacgtacgtggatataatt----aatttgaattaatcaatgatat |
32306369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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