View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5721_low_16 (Length: 334)
Name: NF5721_low_16
Description: NF5721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5721_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 35033569 - 35033265
Alignment:
| Q |
19 |
gtctttgatcaggtggtgttggggatgagaaattcaacgctggttgttgaacttcagtttcagcttgtagtcttacatctcctcttgttgccacatgata |
118 |
Q |
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| T |
35033569 |
gtctttgatcaggtggtgttggggatgagaaattcaacgctggttgttgaacttcagtttcagcttggagtcttacatctcctcttgttgccacatggca |
35033470 |
T |
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| Q |
119 |
atcatcagcagaatcctaatggatttgattcaattacacacacgtatatttttagtgaatcataattaattatttcataagcttgcatgtaataattaga |
218 |
Q |
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| T |
35033469 |
atcatcagcagaatcctaatggatttgattcaattacacacacgtatattttt-gtgaatcataattaattatttcataagcttgcatgtaataattaga |
35033371 |
T |
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| Q |
219 |
atttaaatgatatgtatcataatttaaattaattttacattgaatctaataaataaatcattccatgttggtgatagaactatttgcattgcattgtata |
318 |
Q |
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| T |
35033370 |
atttaaattatatgtatcgtaatttaaattaattttacattgaatctaataaataaatcattccatgttggtgatagaactatttgcattgcattgtata |
35033271 |
T |
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| Q |
319 |
cctatg |
324 |
Q |
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|||||| |
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| T |
35033270 |
cctatg |
35033265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 133 - 271
Target Start/End: Complemental strand, 32570814 - 32570675
Alignment:
| Q |
133 |
cctaatggatttgattcaattacacacacgtatatttttagtgaatcataattaattatttcataagcttgcatgtaataattagaatttaaatgatatg |
232 |
Q |
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| T |
32570814 |
cctaatggattcaatccaattacacatatgtgaatttttagtgaatcataagtaattagtttctaagctttcacataataatgagaatttgaatgatata |
32570715 |
T |
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| Q |
233 |
tatcat-aatttaaattaattttacattgaatctaataaa |
271 |
Q |
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| T |
32570714 |
tatcatcaatgtgaattaattttatattgaatctaataaa |
32570675 |
T |
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