View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5721_low_17 (Length: 328)
Name: NF5721_low_17
Description: NF5721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5721_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 54879644 - 54879966
Alignment:
| Q |
1 |
aatttaatgaggttttttcagtatcagagcatttactattagacaacacctctagaaacaattttaagaaaaatgttcaaatacgagaaagtgagctttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||| |
|
|
| T |
54879644 |
aatttaatgaggttttttcagtatcagagcatttactattagacaacacctctagaaacaattttaagaaaaatgttcaaatatgagaaagtaagatttg |
54879743 |
T |
|
| Q |
101 |
ac----aatcgacatgttttaataccatttatgtttgatacttttagctttttagttttagaggatgtgaatattctacaacgagttcaaaaaggtttag |
196 |
Q |
| |
|
|| |||| ||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54879744 |
actgacaatcaacatgttttaatatcatttatgtttgatacttttgactttttagtgttagaggatgtgaatattctacaacgagttcaaaaaggtttag |
54879843 |
T |
|
| Q |
197 |
cggtccagtttgttaccagtttatctttcatttttatgtaattgaatacgttttattgattt---------tttatttcaatgactcatttgttcaatat |
287 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
54879844 |
cgacgcagtttgttaccggtttatctttcatttttgtgtaattgaatacgttttattaatttttttttatatttatttcaatgactcatttgttcaatat |
54879943 |
T |
|
| Q |
288 |
aatgtgatatttgaccacacagc |
310 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
54879944 |
aatgtgatatttgaccacacagc |
54879966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University