View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5721_low_18 (Length: 321)
Name: NF5721_low_18
Description: NF5721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5721_low_18 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 12 - 302
Target Start/End: Complemental strand, 11996999 - 11996709
Alignment:
| Q |
12 |
atgaaagagcttcgagagaaaaagataccctttaccatccgtcgttacttgcctgatggaaggtaattactgagcttgattctttcttttttagttttgg |
111 |
Q |
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| T |
11996999 |
atgaaagagcttcgagagaaaaagataccctttaccatccgtcgttacttgcctgatggaaggtaattactgagcttgattctttcttttttagttttgg |
11996900 |
T |
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| Q |
112 |
aaaggtgaaagatgtgttaagacttaagctgaattttccttcatgtcatgcgttttctgtttttacaaaattgtgcagctatgaagattggggagttgat |
211 |
Q |
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| T |
11996899 |
aaaggtgaaagatgtgttaagacttaagctgaattttcattcatgtcatgcgttttctgtttttacaaaattgtgcagctatgaagattggggagttgat |
11996800 |
T |
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| Q |
212 |
gaattgattgtggaagactcatgggagaggcaagttggtggtgattgatggctgaaaacgtaactcaccgtcacattggtctctgactcaa |
302 |
Q |
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| T |
11996799 |
gaattgattgtggaagactcatgggagaggcaagttggtggtgattgatggctgaaagcgtaactcaccgtcacattggtctctgactcaa |
11996709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 12 - 268
Target Start/End: Original strand, 106191 - 106467
Alignment:
| Q |
12 |
atgaaagagcttcgagagaaaaagataccctttaccatccgtcgttacttgcctgatggaaggtaattactgagcttgattc-----------------t |
94 |
Q |
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| T |
106191 |
atgaaagagcttcgagagaaaaagataccctttaccatccgtcgttatttgcctgatggaaggtaattactgtgcttgattccttttttttttttttttt |
106290 |
T |
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| Q |
95 |
ttcttttttagttttggaaaggtgaaagatg---tgttaagacttaagctgaattttccttcatgtcatgcgttttctgtttttacaaaattgtgcagct |
191 |
Q |
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| T |
106291 |
tttttttttagttttggaaaggggtgagagggtatgttaagacttaagttgaattttccttcatgtcatgcgttttctgtttttgcaaaattgtgcagct |
106390 |
T |
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| Q |
192 |
atgaagattggggagttgatgaattgattgtggaagactcatgggagaggcaagttggtggtgattgatggctgaaa |
268 |
Q |
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| T |
106391 |
atgaagactggggagttgatgaattgattgtggaagactcatggaagaggcaagttggtggtgattgatggctgaaa |
106467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 36634952 - 36635034
Alignment:
| Q |
178 |
aaaattgtgcagctatgaagattggggagttgatgaattgattgtggaagactcatgggagaggcaagttggtggtgattgat |
260 |
Q |
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| T |
36634952 |
aaaattgtccagctatgaagattggggagttgatgagctgattgtggaagactcctggaagagacaagtgggtggcgattgat |
36635034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 36634809 - 36634849
Alignment:
| Q |
42 |
tttaccatccgtcgttacttgcctgatggaaggtaattact |
82 |
Q |
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| T |
36634809 |
tttaccatccgtcgctacttgcctgatggaaggtaaatact |
36634849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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