View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5721_low_19 (Length: 307)
Name: NF5721_low_19
Description: NF5721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5721_low_19 |
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| [»] scaffold0072 (2 HSPs) |
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Alignment Details
Target: scaffold0072 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 42 - 307
Target Start/End: Original strand, 40426 - 40690
Alignment:
| Q |
42 |
tgttatggataagaccaaggtaattactgcagtaactaatgcagaaggtgaggaaggacagatgtcacataatccacagatacagggaccaagacgtgga |
141 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
40426 |
tgttatggataagaccaaggaaattactgcagtaactaatgcagaaggagaggaaggacagatgtcacgtaatccacagatccagggaccaagacgtgga |
40525 |
T |
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| Q |
142 |
atgaggcataggattcctaacagaaagttcactgaggactctgttaaataggacaatcatttgcattgttaaggggggaataatatttggtagaaatatg |
241 |
Q |
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| T |
40526 |
atgaggcatatgattcctaacagaaagttcaatgaggactctgttaaataggacaatcattagcattgttaa-gggggaataatatttggtagaattatg |
40624 |
T |
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| Q |
242 |
gnnnnnnnnnnnnnntgaagctttatgcttttctgcactatcatttcattccctgtacctttcttc |
307 |
Q |
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| T |
40625 |
gctctctctctctctttaagctttatgcttttctgcactatcatttcattccctgtacctttcttc |
40690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 42 - 307
Target Start/End: Original strand, 45258 - 45520
Alignment:
| Q |
42 |
tgttatggataagaccaaggtaattactgcagtaactaatgcagaaggtgaggaaggacagatgtcacataatccacagatacagggaccaagacgtgga |
141 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
45258 |
tgttatggataagaccaaggaaattactgcagtaactaatgcagaaggagaggaaggacagatgtcacgtaatccacagatccagggaccaagacgtgga |
45357 |
T |
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| Q |
142 |
atgaggcataggattcctaacagaaagttcactgaggactctgttaaataggacaatcatttgcattgttaaggggggaataatatttggtagaaatatg |
241 |
Q |
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| T |
45358 |
atgaggcatatgattcctaacagaaagttcaatgaggactctgttaaataggacaatcattagcattgttaa-gggggaataatatttggtagaattatg |
45456 |
T |
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| Q |
242 |
gnnnnnnnnnnnnnntgaagctttatgcttttctgcactatcatttcattccctgtacctttcttc |
307 |
Q |
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| T |
45457 |
g--ctctctctctcttaaagctttatgcttttctgcactatcatttcattccctgtacctttcttc |
45520 |
T |
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