View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5721_low_2 (Length: 742)
Name: NF5721_low_2
Description: NF5721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5721_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 493; Significance: 0; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 90 - 658
Target Start/End: Original strand, 8225124 - 8225691
Alignment:
| Q |
90 |
aagaaaaatacataacatacttaatgggctatatgttgtaggttataaaaacatatttaaccaataaaattatcaataaaagcaacactaattctctatt |
189 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||| |
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| T |
8225124 |
aagaaaaatacataacatacttaatgggctatatgttgtaggttataaaaacatatttaaccaataaaattatcaataaaagaaa-actaattctcaatt |
8225222 |
T |
|
| Q |
190 |
tacaactataatatatgagatttgaactatttaccaagatgttacaaatacaagaagaaaatagttaaacggaatgaacatccaaggtacatttttgctt |
289 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8225223 |
tacaactataatatatgagatttgaactatttaccaagatgttacaaatacaagaagaaaatagttaaacggaatgaacatccaagatacatttttgctt |
8225322 |
T |
|
| Q |
290 |
ttgttatgaagtggtacattgtggatcctttcaagatgattttggttatctttctttctttttgagctcttgttttatgctctaaataagcattcattga |
389 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8225323 |
ttgttatgaagaggtacgttgtggatcctttcaagatgattttggttatctttctttctttttgagctcttgttttgtgctctaaataagcattcattga |
8225422 |
T |
|
| Q |
390 |
tggtatttcctctctaagatgattcaatgcttgattcaccaatgtcctatcagatatgcagagatatcacaaaagtgagaggaacaacacaataatgaga |
489 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8225423 |
tggtatttcctctctaagatgatccaatgcttgattcaccaatgtcctatcatatatgcagaaatatcacaaaagtgagaggaacaacacaataatgaga |
8225522 |
T |
|
| Q |
490 |
tgccgttggaaaaggtgacccaagtactacaagcacatattttataataagtatttttaacaatctatatttaatcaaagaaattacactcgtattaaaa |
589 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||| | |
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|
| T |
8225523 |
tgtcgttggaaaaggtgacccaagtactacaagcacatattttataataagtagttttaacaacctatatttaatcaaagaaattacacttgtattaaga |
8225622 |
T |
|
| Q |
590 |
tttttgttaatctttgtcataatgaacaatagacccaataaaacaaagaagacaaacaaatatgacatc |
658 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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|
| T |
8225623 |
tttttgttaatctttgtcataatgaacaatagacccaataaaataaagaagatgaacaaatatgacatc |
8225691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 90 - 658
Target Start/End: Original strand, 8213674 - 8214240
Alignment:
| Q |
90 |
aagaaaaatacataacatacttaatgggctatatgttgtaggttataaaaacatatttaaccaataaaattatcaataaaagcaacactaattctctatt |
189 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||| || ||||||||||||| ||| ||||| ||||||||||||||||||| | ||| ||| |
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|
| T |
8213674 |
aagaaaaatacataacatacttaactggctatattttgtagggta--aaaacatatttaatcaagaaaatcatcaataaaagcaacactagtgctcaatt |
8213771 |
T |
|
| Q |
190 |
tacaactataatatatgagatttgaactatttaccaagatgttacaaatacaagaagaaaatagttaaacggaatgaacatccaaggtacatttttgctt |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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|
| T |
8213772 |
tacaactataatatatgagatttgaactatttaccaagatgttacaaatacaagaagaaaatagttaaacagaatgaatatccaaggtacatttttgctt |
8213871 |
T |
|
| Q |
290 |
ttgttatgaagtggtacattgtggatcctttcaagatgattttggttatctttctttctttttgagctcttgttttatgctctaaataagcattcattga |
389 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
8213872 |
ttgttatgaagtgggacattgtggatcctttcaagatgattttggttatctttctttctctttgagctcttgttttgtgctctaaataagcattcattga |
8213971 |
T |
|
| Q |
390 |
tggtatttcctctctaagatgattcaatgcttgattcaccaatgtcctatcagatatgcagagatatcacaaaagtgagaggaacaacacaataatgaga |
489 |
Q |
| |
|
|| ||||||||||| |||||||| |||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||| |
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|
| T |
8213972 |
tgatatttcctctccaagatgatccaatgcttgattcaccaatgtcctatcatatatgcggaaatatcacaaaagtgagaggaacaacacaataatgaga |
8214071 |
T |
|
| Q |
490 |
tgccgttggaaaaggtgacccaagtactacaagcacatattttataataagtatttttaacaatctatatttaatcaaagaaattacactcgtattaaaa |
589 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
8214072 |
tgccgttggaaaaggtgacccaaggactacaagcacatattttataataagtagttttaacaatctatatttaatcaaagaaattacactcatattaaaa |
8214171 |
T |
|
| Q |
590 |
tttttgttaatctttgtcataatgaacaatagacccaataaaacaaagaagacaaacaaatatgacatc |
658 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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|
| T |
8214172 |
tttttgttaatctttatcataatgaacaatagacccaataaaacaaagaagacgaacaaacatgacatc |
8214240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 196 - 359
Target Start/End: Original strand, 8235901 - 8236064
Alignment:
| Q |
196 |
tataatatatgagatttgaactatttaccaagatgttacaaatacaagaagaaaatagttaaacggaatgaacatccaaggtacatttttgcttttgtta |
295 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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|
| T |
8235901 |
tataatatatgagatttgaattatttatcaagatgttacaaatacaagaagaaaatagttaaatggaatgaacatccaaggtgcatttttgcttttgtta |
8236000 |
T |
|
| Q |
296 |
tgaagtggtacattgtggatcctttcaagatgattttggttatctttctttctttttgagctct |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
8236001 |
tgaagtggtacattgtggatcctttcaagatgattttggttatctttctttctttttgtgctct |
8236064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 536 - 658
Target Start/End: Original strand, 8236205 - 8236327
Alignment:
| Q |
536 |
ataagtatttttaacaatctatatttaatcaaagaaattacactcgtattaaaatttttgttaatctttgtcataatgaacaatagacccaataaaacaa |
635 |
Q |
| |
|
||||||| |||| ||||| |||||||||||||||||| ||||||||||| | ||| ||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
8236205 |
ataagtaactttaccaatccatatttaatcaaagaaatcacactcgtattgagattcttgttaatctttgtcataatgaacaatcgacccaataaaacaa |
8236304 |
T |
|
| Q |
636 |
agaagacaaacaaatatgacatc |
658 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
8236305 |
agaagacgaacaaatatgacatc |
8236327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 655 - 724
Target Start/End: Original strand, 8214261 - 8214330
Alignment:
| Q |
655 |
catccctgtaaaaatgatgcaaaaattcaggagtttttctcccatggcaatggatctagggagacaaaat |
724 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
8214261 |
catccctggaaaaatgatgcaaaaattcaggagtttttctcccatggcaatggatccagggagacaaaat |
8214330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 115 - 342
Target Start/End: Original strand, 8231954 - 8232183
Alignment:
| Q |
115 |
gggctatatgttgtaggttataaaaacatatttaaccaataaaa-ttatcaataaaagcaacactaattctctatttacaactataatatatgagatttg |
213 |
Q |
| |
|
||||||||| |||||| | |||||||||| ||||| || |||| |||| |||||||| ||| |||| || |||| |||| | | ||||| || || |
|
|
| T |
8231954 |
gggctatattttgtagcgtttaaaaacataattaactaaaaaaaattattaataaaagtgacaataatggtcaatttgcaacagtcctttatgacatatg |
8232053 |
T |
|
| Q |
214 |
aactatttaccaagatgttacaaatacaagaagaaaatagttaaacggaatgaacatccaaggtacatttttgcttttgttatgaagtggtacattgtgg |
313 |
Q |
| |
|
||||||||||| ||| |||||||||||| ||||| ||| ||| | | |||| | ||| ||||||||| |||| ||||||||||||||| || ||||||| |
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|
| T |
8232054 |
aactatttacctagaggttacaaatacaggaagataatgattacaagaaatgcaaatctaaggtacatgtttgattttgttatgaagtgatatattgtgg |
8232153 |
T |
|
| Q |
314 |
atcc-tttcaagatgattttggttatcttt |
342 |
Q |
| |
|
|||| |||||||||||||||| |||||||| |
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|
| T |
8232154 |
atccttttcaagatgattttgattatcttt |
8232183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 655 - 710
Target Start/End: Original strand, 8225712 - 8225767
Alignment:
| Q |
655 |
catccctgtaaaaatgatgcaaaaattcaggagtttttctcccatggcaatggatc |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8225712 |
catccctgtaaaaatgatgcaaaaattcaggagtttttctcccatggcaatggatc |
8225767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 8235530 - 8235598
Alignment:
| Q |
90 |
aagaaaaatacataacatacttaatgggctatatgttgtaggttataaaaacatatttaaccaataaaa |
158 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| ||||||| |||| ||||||||||||||||||||| |
|
|
| T |
8235530 |
aagaaaaatacataacatacttaaaggtctataatttgtagggtatacaaacatatttaaccaataaaa |
8235598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 8224564 - 8224618
Alignment:
| Q |
1 |
gcatagaatgagattgtgatggttctttttaagctttatcagagatcatgtgttt |
55 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
8224564 |
gcatagaatgagattgtgagagttctttttaagctttatcagagattatgtgttt |
8224618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 663 - 701
Target Start/End: Original strand, 8236356 - 8236394
Alignment:
| Q |
663 |
taaaaatgatgcaaaaattcaggagtttttctcccatgg |
701 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8236356 |
taaaaatgatgctaaaattcaggagtttttctcccatgg |
8236394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 466 - 509
Target Start/End: Original strand, 8232617 - 8232660
Alignment:
| Q |
466 |
gagaggaacaacacaataatgagatgccgttggaaaaggtgacc |
509 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||| |||||||| |
|
|
| T |
8232617 |
gagaggaacaacacgataatgacatgccgttggaagaggtgacc |
8232660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 207 - 332
Target Start/End: Original strand, 8223185 - 8223311
Alignment:
| Q |
207 |
agatttgaactatttaccaagatgttacaaatacaagaagaaaa-tagttaaacggaatgaacatccaaggtacatttttgcttttgttatgaagtggta |
305 |
Q |
| |
|
||||||||||| ||| || ||| ||||||| |||| | |||||| | ||||||| | ||| | |||||| || | |||| ||||||||||||||| || |
|
|
| T |
8223185 |
agatttgaactcttttcctagaggttacaagtacatgtagaaaaatggttaaacaggatgcaaatccaatttatgtgtttgtttttgttatgaagtgata |
8223284 |
T |
|
| Q |
306 |
cattgtggatcctttcaagatgatttt |
332 |
Q |
| |
|
|||| | |||||||||||||| ||||| |
|
|
| T |
8223285 |
cattattgatcctttcaagataatttt |
8223311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 42704968 - 42704911
Alignment:
| Q |
269 |
atccaaggtacattttt-gcttttgttatgaagtggtacattgtggatcctttcaaga |
325 |
Q |
| |
|
||||||||||||| || |||||||||||||| |||||||| ||||| |||||||||| |
|
|
| T |
42704968 |
atccaaggtacatgcttagcttttgttatgaactggtacatcgtggagcctttcaaga |
42704911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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