View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5721_low_23 (Length: 284)
Name: NF5721_low_23
Description: NF5721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5721_low_23 |
 | |
|
| [»] scaffold0072 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 74 - 255
Target Start/End: Original strand, 46381296 - 46381477
Alignment:
| Q |
74 |
ataatgcacatgtagtttgtgaactgacaaatattttgtgtgctacgagttcattcaattattttcaaagcttgagtggctgaactaaagtttacttcgt |
173 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46381296 |
ataatacacatgtagtttgtgaactgacaaatattttgtgtgctacgagttcattcaattattttcaaagcttgagtggctgaactaaagtttacttcgt |
46381395 |
T |
|
| Q |
174 |
ccaaaatgttttttataacgaaaaataaaacataaggattgcatttaaatttatataatcactcctacaattcggaaacatt |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46381396 |
ccaaaatgttttttataacgaaaaataaaacataaggattgcatttaaatttatataatcactcctacaattcggaaacatt |
46381477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 40716 - 40790
Alignment:
| Q |
1 |
aataatattcagattattatctttttactatcatttcaatataacagtaccttttatcatatcaaatcataacat |
75 |
Q |
| |
|
||||||||| ||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40716 |
aataatatttagattattatcattttactgtcatttcaatataacagtacctattatcatatcaaatcataacat |
40790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 45546 - 45619
Alignment:
| Q |
1 |
aataatattcagattattatctttttactatcatttcaatataacagtaccttttatcatatcaaatcataaca |
74 |
Q |
| |
|
||||||||| ||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
45546 |
aataatatttagattattatcattttactgtcatttcaatataacagtacctattatcatatcaaatcataaca |
45619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University