View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5721_low_25 (Length: 255)
Name: NF5721_low_25
Description: NF5721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5721_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 33 - 221
Target Start/End: Original strand, 25312622 - 25312811
Alignment:
| Q |
33 |
ttaccaaatacctccactagtcaaagagagtgtgaagaagaaaccactttttattattctgaaaatctcaannnnnnn-aagattgaaaaaatctatctt |
131 |
Q |
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| T |
25312622 |
ttaccaaatacctccactagtcaaagagagtgtgaagaagaaaccactttttattattctgaaaatctcaattttttttaagattgaaaaaatctatctt |
25312721 |
T |
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| Q |
132 |
gctgaatggtattggaacacataaatatgacaacaatacgacacatgtgtattgtatactgtttatcgtatctatacaatgaataataca |
221 |
Q |
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| T |
25312722 |
gctgaatggtattggaacacataaatatgacaacaatacgacacatgtgtattgtatactgtttatcgtatctatacaatgaataataca |
25312811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 25284935 - 25285026
Alignment:
| Q |
130 |
ttgctgaatggtattggaacacataaatatgacaacaatacgacacatgtgtattgtatactgtttatcgtatctatacaatgaataataca |
221 |
Q |
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| T |
25284935 |
ttgctgaatggtatttgaacacatcaatatgataacaatacgacacatatgtattgtgtactgtttaccgtctttatacaatgaataataca |
25285026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 25284817 - 25284888
Alignment:
| Q |
33 |
ttaccaaatacctccactagtcaaagagagtgtgaagaagaaacca-ctttttattattctgaaaatctcaa |
103 |
Q |
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| T |
25284817 |
ttaccaaacacctctagtagtcaaagagagtgtgcagaagaaaccagatttttattattatgaaaatctcaa |
25284888 |
T |
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