View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5721_low_27 (Length: 255)
Name: NF5721_low_27
Description: NF5721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5721_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 39583092 - 39582856
Alignment:
| Q |
1 |
acataacagatctgaactgactgataatgagaatgaatagaatattgatgcaaattttaataatgtggcagtctactaatttaagttttaaattagctga |
100 |
Q |
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| T |
39583092 |
acataacagatctgaactgactgataatgagaatgaatagaatattgatgcaaattttaatattgtggcagtctactaatttaagttttaaattagctga |
39582993 |
T |
|
| Q |
101 |
aatagtacatcaataaataactcaataagcgtaccttttgaaagttttaaacaaacnnnnnnnnnnnctcacgttttacgcacaccatatataactatat |
200 |
Q |
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| T |
39582992 |
aatagtacatcaataaataactcaataagcgtaccttttgaaagttttaaacaaacaaaaaaaaaaactcacgttttacgcacaccatatataactatat |
39582893 |
T |
|
| Q |
201 |
aagcatgtttaagaagcacaatcttctagttcagatt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
39582892 |
aagcatgtttaagaagcacaatcttctagttcagatt |
39582856 |
T |
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