View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5721_low_28 (Length: 254)
Name: NF5721_low_28
Description: NF5721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5721_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 10232773 - 10232993
Alignment:
| Q |
14 |
aatatagtgtaatttaaatttaatcaaatgaaagaataaaccatcaatttagtccctaacctgggtggccgaataatgaaattgatgaattggtcaatca |
113 |
Q |
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| T |
10232773 |
aatatagtgtaatttaaatttaatcaaatgaaagaataaaccatcaatttagtccctaacctgggtggccgaataatgaaattgatgaattggtcaatca |
10232872 |
T |
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| Q |
114 |
tcttgctagtacatgtatctctctcagagcagctccgctcgggaatacaagtaaagcggagtctctgagaaaatcagtcaatgctctcccatttctcaac |
213 |
Q |
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| T |
10232873 |
tcttgctagtacatgtatctttctcagagcagctccgctcgggaatacaagtaaagcggagtctctgagaaaatcagtcaatgctctcccatttctcaac |
10232972 |
T |
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| Q |
214 |
gaaactcggtaaattacgcac |
234 |
Q |
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| T |
10232973 |
gaaactcggtaaattacgcac |
10232993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 149
Target Start/End: Original strand, 10842817 - 10842931
Alignment:
| Q |
35 |
aatcaaatgaaagaataaaccatcaatttagtccctaacctgggtggccgaataatgaaattgatgaattggtcaatcatcttgctagtacatgtatctc |
134 |
Q |
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| T |
10842817 |
aatcaaatgaaagaataaacaatcaatttagtccctaacctgggaggccaagtaacaaaattgatgaattggcccatcatcttgcttgttcatgtaccac |
10842916 |
T |
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| Q |
135 |
tctcagagcagctcc |
149 |
Q |
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||| ||||||||||| |
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| T |
10842917 |
tcttagagcagctcc |
10842931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 72
Target Start/End: Original strand, 35464672 - 35464703
Alignment:
| Q |
41 |
atgaaagaataaaccatcaatttagtccctaa |
72 |
Q |
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| T |
35464672 |
atgaaagaataaaccatcaatttagtccctaa |
35464703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 56249673 - 56249732
Alignment:
| Q |
72 |
acctgggtggccgaataatgaaattgatgaattggtcaatcatcttgctagtacatgtat |
131 |
Q |
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| T |
56249673 |
acctgggagggcgaataacgaaattgatgaattgctcaatcatcttgttactacacgtat |
56249732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 72
Target Start/End: Complemental strand, 39406133 - 39406105
Alignment:
| Q |
44 |
aaagaataaaccatcaatttagtccctaa |
72 |
Q |
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| T |
39406133 |
aaagaataaaccatcaatttagtccctaa |
39406105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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