View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5721_low_3 (Length: 693)
Name: NF5721_low_3
Description: NF5721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5721_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 280 - 685
Target Start/End: Complemental strand, 7234637 - 7234226
Alignment:
| Q |
280 |
ggggcatagggtatggtggggcaggtaaagagggaggcgtgatttggaatgtggggtggagaacaaagatgaaataactttcgcaaccctccaattccac |
379 |
Q |
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| T |
7234637 |
ggggcatagggtatggtggggcaggtaaagagggaagcgtgatttggaatgtggggtggagaacaaagatgaaataactttcgcaaccctccaattccac |
7234538 |
T |
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| Q |
380 |
caggggtagtgtcgtcatcatttttcttgttcatg-ttttatggatttcctctgcatttggtaatcctaatttgacatacgttggaaactaaatatgaat |
478 |
Q |
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| T |
7234537 |
caggggtagtgtcgtcatcatttttcttgttcatgtttttatggatttcctctacatttggtaatcctaatttgacatatgttggaaattaaatatgaat |
7234438 |
T |
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| Q |
479 |
-attttatgagttaaaatttgaatttgaattcactgcgtattgaaaaattcaacc-ctttttgcatatatgcagatgtcgtggttcaaattccggacact |
576 |
Q |
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| T |
7234437 |
gtttttatgagtcaaattttgaatttgaattcatttcgtattgaaaaattcaaccattttttgcatatatgcagatgttggggttcgaatttcggacact |
7234338 |
T |
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| Q |
577 |
tcatttctctacgtttataatatgtgagctctagtcact---aagatatttgaccaaaatttcaacctcttttggtagtataatcattggtttattgttt |
673 |
Q |
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| T |
7234337 |
tcatttctctacatttataatatgtgagctctagttactaagaagatatttgaccaaaatctcaacctcttttggtagtataatcattggtttattgttt |
7234238 |
T |
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| Q |
674 |
gcttcatattct |
685 |
Q |
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| T |
7234237 |
gcttcatattct |
7234226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 7234897 - 7234729
Alignment:
| Q |
21 |
tgtggtttcctaaaacaaaactaaaaagtttaagaagggggagaagagagcagaaaataggggtgtaattaagaaagttaggggtgggagaagaagggag |
120 |
Q |
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| T |
7234897 |
tgtggtttcctaagacaaaactaaaaggtttaagaagggggagaagagagcagaaagtaggggtgtaattaagaaagttaggggtgggagaagaagggag |
7234798 |
T |
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| Q |
121 |
gagaagaggaagtaatagaaggggttgaagggttaatttata-agagaaaaaggtgagtaagggagcgt |
188 |
Q |
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| T |
7234797 |
gagaagaggaagtaatagaaggggttgaagggttaatttatagagagaaaaaggtgagtaagggagcgt |
7234729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 542 - 616
Target Start/End: Complemental strand, 8827929 - 8827855
Alignment:
| Q |
542 |
tatatgcagatgtcgtggttcaaattccggacacttcatttctctacgtttataatatgtgagctctagtcacta |
616 |
Q |
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| T |
8827929 |
tatatgcagaggtcggggttcgaatcccggacacttcatttctccacaatttaattgtgtgagctctagtcacta |
8827855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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