View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5721_low_30 (Length: 247)
Name: NF5721_low_30
Description: NF5721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5721_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 20801586 - 20801347
Alignment:
| Q |
1 |
ttatgtgagaaaggaaagattgagtgacactttagaaaagattgtgcagtacatcatggaccagaagttaatgttaataatgataatataagtgatattt |
100 |
Q |
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| T |
20801586 |
ttatgtgagaaaggaaagattgagtgacactttagaaaagattgtgcagtacatcatggaccagaagtaaatattaataatgataatataagtgatattt |
20801487 |
T |
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| Q |
101 |
tcctaacttttgcattaaatgaatgattgttacagctgaaaaagtaggccttgcaacttcaccaccatacctctctctagcatcttctaaggtaaaaaac |
200 |
Q |
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| T |
20801486 |
tcgtaatatttgcattaaatgaatgattgttacagctgaaaaagtaggccttgcaacttcaccaccatacctctctctagcatcttctaaggtaaaaaac |
20801387 |
T |
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| Q |
201 |
aagaatgtatccttcttgagtggtgttaactttgcctctg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
20801386 |
aagaatgtatccttcttgagtggtgttaactttgcctctg |
20801347 |
T |
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