View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5721_low_35 (Length: 235)
Name: NF5721_low_35
Description: NF5721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5721_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 24 - 230
Target Start/End: Complemental strand, 3598795 - 3598583
Alignment:
| Q |
24 |
ggcttgctgcagctttagaaacacaaattgcggaagaccttaataattattgtcctaaattattaatccttttctagagattttaggatgctctaaggag |
123 |
Q |
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| T |
3598795 |
ggcttgctgcagctttagaaacacaaattgcagatggccttaataattattgtcctaaattattaatccttttctagagattttaggatgctctaaggag |
3598696 |
T |
|
| Q |
124 |
gattg------tagttactcttctcttttgaatagattattttcatgagttgttagttcatttctcacatatacttggtaaatattcatatttttagatg |
217 |
Q |
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| T |
3598695 |
gattggatacttggttactcttctcttttgaatagtttattttcatgagttgttagttcatttctcacatatacttggaaaaaattcatatttttagatg |
3598596 |
T |
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| Q |
218 |
ttactggttatgt |
230 |
Q |
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||||||||||||| |
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| T |
3598595 |
ttactggttatgt |
3598583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 129 - 230
Target Start/End: Complemental strand, 45221519 - 45221416
Alignment:
| Q |
129 |
tagttactcttctcttttgaatagattattttcatgagttgttagttcatttctcacatatacttggtaaat--attcatatttttagatgttactggtt |
226 |
Q |
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|||||||||||||||||||||| | ||||||||||||||| ||||||||||||||| |||||||||| |||| | |||||||||||||||||| |||| |
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| T |
45221519 |
tagttactcttctcttttgaattgtttattttcatgagtttttagttcatttctcatatatacttggaaaatgaaatcatatttttagatgttattggtc |
45221420 |
T |
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| Q |
227 |
atgt |
230 |
Q |
| |
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|||| |
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| T |
45221419 |
atgt |
45221416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 129 - 230
Target Start/End: Original strand, 4356335 - 4356438
Alignment:
| Q |
129 |
tagttactcttctcttttgaatagattattttcatgagttgttagttcatttctcacatatacttggtaaat--attcatatttttagatgttactggtt |
226 |
Q |
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|||||||||||||||||||||| | ||||||||| ||||||||||||||||||||| |||||||||| |||| | ||||||||| |||||||| |||| |
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| T |
4356335 |
tagttactcttctcttttgaattgtttattttcaggagttgttagttcatttctcatatatacttggaaaatgaaatcatattttaagatgttattggtc |
4356434 |
T |
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| Q |
227 |
atgt |
230 |
Q |
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|||| |
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| T |
4356435 |
atgt |
4356438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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