View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5721_low_36 (Length: 234)
Name: NF5721_low_36
Description: NF5721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5721_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 43206438 - 43206292
Alignment:
| Q |
18 |
ataggaactggtcttcctccttttgttgctcttagagctgatatggatgctcttcttattcaggtctacannnnnnncttcttaaggttttggttttcaa |
117 |
Q |
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| T |
43206438 |
ataggaactggtcttcctccttttgttgctcttagagctgatatggatgctcttcttattcaggtctactttttgttcttcttaagattttggttttcaa |
43206339 |
T |
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| Q |
118 |
ttatgatcatggattttatctgggtttgatgaaaaggaaaaacaaac |
164 |
Q |
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| T |
43206338 |
ttatgatcatggattttatctgggtttgatgaaaaggaaaaacaaac |
43206292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 43227948 - 43227882
Alignment:
| Q |
18 |
ataggaactggtcttcctccttttgttgctcttagagctgatatggatgctcttcttattcaggtct |
84 |
Q |
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| T |
43227948 |
ataggaactggtcttcctccttttgttgctcttagagctgacatggatgctcttctcatgcaggtct |
43227882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 43224147 - 43224078
Alignment:
| Q |
18 |
ataggaactggtcttcctccttttgttgctcttagagctgatatggatgctcttcttattcaggtctaca |
87 |
Q |
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| T |
43224147 |
ataggaactggtcttcctccttttgtcgctcttagagctgacatggatgctcttctcatgcaggtctaca |
43224078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 43213412 - 43213348
Alignment:
| Q |
18 |
ataggaactggtcttcctccttttgttgctcttagagctgatatggatgctcttcttattcaggt |
82 |
Q |
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| T |
43213412 |
ataggaactggtcttcctccttttgtcgctcttagagctgagatggatgctcttcttatgcaggt |
43213348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 41650211 - 41650275
Alignment:
| Q |
18 |
ataggaactggtcttcctccttttgttgctcttagagctgatatggatgctcttcttattcaggt |
82 |
Q |
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| T |
41650211 |
ataggaactggtcttcctccttttgtagctctcagagctgatatggatgctcttctcatgcaggt |
41650275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 41654751 - 41654815
Alignment:
| Q |
18 |
ataggaactggtcttcctccttttgttgctcttagagctgatatggatgctcttcttattcaggt |
82 |
Q |
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| T |
41654751 |
ataggaactggtcttcctccttttgtcgctctcagagctgaaatggatgctcttcttatgcaggt |
41654815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 31839492 - 31839458
Alignment:
| Q |
34 |
ctccttttgttgctcttagagctgatatggatgct |
68 |
Q |
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| T |
31839492 |
ctccttttgttgctcttagagctgacatggatgct |
31839458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 5073680 - 5073627
Alignment:
| Q |
18 |
ataggaactggtcttcctccttttgttgctcttagagctgatatggatgctctt |
71 |
Q |
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| T |
5073680 |
ataggaactggattgtctccttttgttgctttaagagctgatatggatgctctt |
5073627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 26262851 - 26262888
Alignment:
| Q |
31 |
ttcctccttttgttgctcttagagctgatatggatgct |
68 |
Q |
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| T |
26262851 |
ttcctccatttgttgctcttagagctgacatggatgct |
26262888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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