View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5721_low_37 (Length: 227)
Name: NF5721_low_37
Description: NF5721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5721_low_37 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 23587106 - 23587338
Alignment:
| Q |
1 |
cataataataggaaagtgaattttattgtttataatagtgagagtgttgatcatggttttgcattggttgggcgataaacaattttattcat------gc |
94 |
Q |
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| T |
23587106 |
cataataataggaaagtgaattttattgtttataatagtgagagtgttgatcatagttttgcattggttgggcgataaacaattttattcatgctcatgc |
23587205 |
T |
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| Q |
95 |
tcatcagagcataatagtagaaaagggaattgtattgcttcagtatttggtaagaatggttgtgttccttagctgattgtgtttacttgaatcggtgttt |
194 |
Q |
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| T |
23587206 |
tcatcagagcataatagtagaaaagggaattgtattgcttcagtatttggtaagaatggttgtgttccttagctgattgtgtttacttgaatcggtgttt |
23587305 |
T |
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| Q |
195 |
tcagatgctaagcgattaattggtaggcgattt |
227 |
Q |
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| T |
23587306 |
tcagatgctaagcgattaattggtaggcgattt |
23587338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 23596006 - 23596059
Alignment:
| Q |
12 |
gaaagtgaattttattgtttataatagtgagagtgttgatcatggttttgcatt |
65 |
Q |
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| T |
23596006 |
gaaagtgaattttattgtttatgattgtaagattgttgataatggttttgcatt |
23596059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 23596151 - 23596187
Alignment:
| Q |
188 |
ggtgttttcagatgctaagcgattaattggtaggcga |
224 |
Q |
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| T |
23596151 |
ggtgttttcagatgccaagcgtttaattggtaggcga |
23596187 |
T |
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