View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5721_low_5 (Length: 475)
Name: NF5721_low_5
Description: NF5721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5721_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 36 - 454
Target Start/End: Complemental strand, 55402661 - 55402230
Alignment:
| Q |
36 |
atcaatgctatgagcaaaaggtcaatgggaaaactcaattcttttgtgaggctcttaaatatgaga-------------atgttgtgagtataaatctca |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
55402661 |
atcaatgctatgagcaaaaggtcaatgggaaaactcaattcttttgtgaggctcttaaatatgagactaatgaatgataatgttgtgagtataaatctca |
55402562 |
T |
|
| Q |
123 |
aagggaatgccaatccaaaaacactaatctatttttgtgtgactaacgaataaaaagaagnnnnnnngactaatattaactgtgagattcactgcaaaac |
222 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
55402561 |
aagggaatgccaatccaaaaagactaatctatttttgtttgactaacgaataaaaagaagaaaaaaagactaatattaactgtgagattcactgcaaaac |
55402462 |
T |
|
| Q |
223 |
ttattaataatcttgttaaacnnnnnnnggactcgtaatattgcactaccgttcatgagccgatgtcttcaacaacgttcactccacaacactttatttg |
322 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55402461 |
ttattaataatcttgttaaacaaaaaaaggactcgtaatattgcactaccgttcatgagccgatgtcttcaacaacgttcactccacaacactttatttg |
55402362 |
T |
|
| Q |
323 |
accaacctctcgacaaaaacacgagtgttgttgtgaccataaaatgaagaggtaattttaaaagactggtttattagatgaaagtgtttctagttgtaca |
422 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
55402361 |
accaacctctcgacaaaaacacaagtgttgttgtgaccataaaatgaagaggtaattttaaaagactagtttattagatgaaagtgtttctagttataca |
55402262 |
T |
|
| Q |
423 |
agctccagttttgaggcgagtctttctgaagt |
454 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |
|
|
| T |
55402261 |
agctccagttttgaggcgaatctttctgaagt |
55402230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University