View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5721_low_9 (Length: 401)
Name: NF5721_low_9
Description: NF5721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5721_low_9 |
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| [»] scaffold0685 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 29550270 - 29549887
Alignment:
| Q |
1 |
tctgcacacctgataacatagttcacaaaatgaaatttattagtagttagaaaaattaggcctgaaaagcaacatattttggtatgacatatgaagaaga |
100 |
Q |
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||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29550270 |
tctgcgcacctgataacatagtccaccaaatgaaatttattagtagttagaaaaattaggcctgaaaagcaacatattttggtataacatatgaagaaga |
29550171 |
T |
|
| Q |
101 |
ttccaataaattgaccctgtcatgcttataaaaaatcgcgatacataatgtaggattaatgctaaagttaccaattgttctagtactcctctcgtttttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
29550170 |
ttccaataaattgaccctgtcatgcttataaaaaatcgcgatacataatgtaggattaatgctcaagttaccaattgttctagtactcctttcgtttttt |
29550071 |
T |
|
| Q |
201 |
gagaggtcaataatcaaacttacttgtctggaatttgtaatgtcgggtacatgtcacgcaaaatcgtagccagttcagaaaaatgtatcactctttcgac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29550070 |
gagaggtcaataatcaaacttacttgtctggaatttgtaatgtcgggtacatgtcacgcaaaatcttagccagttcagaaaaatgtatcactctttcgac |
29549971 |
T |
|
| Q |
301 |
caaacaatatcttccactagctgaagcattttcatatgcttgaatatgtgcatttgcaatatccttcacattaatccatccaaa |
384 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29549970 |
caaacaatatcttccactagctgaagcattctcatatgcttgaatatgtgcatttgcaatatccttcacattaatccatccaaa |
29549887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 207 - 384
Target Start/End: Complemental strand, 29556637 - 29556460
Alignment:
| Q |
207 |
tcaataatcaaacttacttgtctggaatttgtaatgtcgggtacatgtcacgcaaaatcgtagccagttcagaaaaatgtatcactctttcgaccaaaca |
306 |
Q |
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|||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||| |||| |||||||| | ||| |||||||| ||||||| |
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| T |
29556637 |
tcaataatcaaaattacttgtctgggatttgtaatgtcgggtacatatcacgcaaaataatagcaagttcagatatgtgtgcaactctttcagccaaaca |
29556538 |
T |
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| Q |
307 |
atatcttccactagctgaagcattttcatatgcttgaatatgtgcatttgcaatatccttcacattaatccatccaaa |
384 |
Q |
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|||||||||||||| |||||||| |||||||| |||||||| || || |||| |||||||||||| ||||||||||| |
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| T |
29556537 |
atatcttccactagttgaagcatcctcatatgcatgaatatgagcgttcgcaacatccttcacattgatccatccaaa |
29556460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 217 - 380
Target Start/End: Complemental strand, 29559975 - 29559813
Alignment:
| Q |
217 |
aacttacttgtctggaatttgtaatgtcgggtacatgtcacgcaaaatcgtagccagttcagaaaaatgtatcactctttcgaccaaacaatatcttcca |
316 |
Q |
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|||||||||||||| ||||| ||||||||| ||||| ||||||||| | | |||||||| ||||| |||||||||||| |||| |||||||||||| |
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| T |
29559975 |
aacttacttgtctgaaattt-taatgtcggatacatacaacgcaaaatgtttacaagttcagagaaatgcatcactctttcggccaagcaatatcttcca |
29559877 |
T |
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| Q |
317 |
ctagctgaagcattttcatatgcttgaatatgtgcatttgcaatatccttcacattaatccatc |
380 |
Q |
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| T |
29559876 |
cttgctgaagcatcttcatatgcattaatatgggcgtttgcaacatccttcacgttgatccatc |
29559813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 29560601 - 29560570
Alignment:
| Q |
1 |
tctgcacacctgataacatagttcacaaaatg |
32 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
29560601 |
tctgcacacctgataacatagttcacaaaatg |
29560570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0685 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: scaffold0685
Description:
Target: scaffold0685; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 5943 - 5560
Alignment:
| Q |
1 |
tctgcacacctgataacatagttcacaaaatgaaatttattagtagttagaaaaattaggcctgaaaagcaacatattttggtatgacatatgaagaaga |
100 |
Q |
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||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5943 |
tctgcgcacctgataacatagtccaccaaatgaaatttattagtagttagaaaaattaggcctgaaaagcaacatattttggtataacatatgaagaaga |
5844 |
T |
|
| Q |
101 |
ttccaataaattgaccctgtcatgcttataaaaaatcgcgatacataatgtaggattaatgctaaagttaccaattgttctagtactcctctcgtttttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
5843 |
ttccaataaattgaccctgtcatgcttataaaaaatcgcgatacataatgtaggattaatgctcaagttaccaattgttctagtactcctttcgtttttt |
5744 |
T |
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| Q |
201 |
gagaggtcaataatcaaacttacttgtctggaatttgtaatgtcgggtacatgtcacgcaaaatcgtagccagttcagaaaaatgtatcactctttcgac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||| | ||| |||||||| | |
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| T |
5743 |
gagaggtcaataatcaaacttacttgtctggaatttgtaatgtcgggtacatatcacgcaaaataatagcaagttcagatatgtgtgcaactctttcagc |
5644 |
T |
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| Q |
301 |
caaacaatatcttccactagctgaagcattttcatatgcttgaatatgtgcatttgcaatatccttcacattaatccatccaaa |
384 |
Q |
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|||||||||||||||||||| |||||||| |||||||| |||||||| || || |||| |||||||||||| ||||||||||| |
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| T |
5643 |
caaacaatatcttccactagttgaagcatcctcatatgcatgaatatgagcgttcgcaacatccttcacattgatccatccaaa |
5560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 217 - 372
Target Start/End: Complemental strand, 25935999 - 25935844
Alignment:
| Q |
217 |
aacttacttgtctggaatttgtaatgtcgggtacatgtcacgcaaaatcgtagccagttcagaaaaatgtatcactctttcgaccaaacaatatcttcca |
316 |
Q |
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|||||||||||||| ||||||||| || ||||||| ||||| |||||| |||| ||||| ||| | |||| |||||| || ||||||||||||||||| |
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| T |
25935999 |
aacttacttgtctgaaatttgtaaagttgggtacagatcacgtaaaatcatagcaagttctgaatagtgtaccactctctcagccaaacaatatcttcca |
25935900 |
T |
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| Q |
317 |
ctagctgaagcattttcatatgcttgaatatgtgcatttgcaatatccttcacatt |
372 |
Q |
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| T |
25935899 |
ctagctgaagcagtctcatatgccagaatatgggcgttagcaacatctttcacatt |
25935844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 383
Target Start/End: Complemental strand, 26103148 - 26102982
Alignment:
| Q |
217 |
aacttacttgtctggaatttgtaatgtcgggtacatgtcacgcaaaatcgtagccagttcagaaaaatgtatcactctttcgaccaaacaatatcttcca |
316 |
Q |
| |
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|||||||||||||| |||| |||| || ||||||| ||||| |||||| |||| ||||| ||| | |||| |||||| || |||| || | |||||| |
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| T |
26103148 |
aacttacttgtctgaaattggtaacgttgggtacaaatcacgtaaaatcatagcaagttctgaatagtgtaccactctctccgccaacaaacaccttcca |
26103049 |
T |
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| Q |
317 |
ctagctgaagcattttcatatgcttgaatatgtgcatttgcaatatccttcacattaatccatccaa |
383 |
Q |
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|||||||||||| | |||||||| ||||| || || || |||| ||| |||||||| | |||||||| |
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| T |
26103048 |
ctagctgaagcaatctcatatgcgtgaatgtgggcgttagcaacatctttcacattgacccatccaa |
26102982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 371
Target Start/End: Complemental strand, 108333 - 108261
Alignment:
| Q |
299 |
accaaacaatatcttccactagctgaagcattttcatatgcttgaatatgtgcatttgcaatatccttcacat |
371 |
Q |
| |
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|||||||||| ||||||||||||||||||||| || || || ||||||| |||||||||| ||| ||||||| |
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| T |
108333 |
accaaacaatgtcttccactagctgaagcattctcgtacgccagaatatgggcatttgcaacatctttcacat |
108261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 384
Target Start/End: Complemental strand, 89224 - 89142
Alignment:
| Q |
302 |
aaacaatatcttccactagctgaagcattttcatatgcttgaatatgtgcatttgcaatatccttcacattaatccatccaaa |
384 |
Q |
| |
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||||||| ||||||||| ||||||||||| || || || ||||||| |||||||||| ||| |||||||| | ||||||||| |
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| T |
89224 |
aaacaatgtcttccactcgctgaagcattctcgtacgccagaatatgggcatttgcaacatctttcacattgacccatccaaa |
89142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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