View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5722-Insertion-3 (Length: 533)
Name: NF5722-Insertion-3
Description: NF5722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5722-Insertion-3 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0168 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 8 - 533
Target Start/End: Complemental strand, 30107637 - 30107111
Alignment:
| Q |
8 |
caactttttaaattattatcagtatcttcgtgtca-gtgttgtgtctggtgtccggacaggtccgcgcctgtgcttcatagatagaactaacctggattt |
106 |
Q |
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||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30107637 |
caactttttaaattattatcagtatctacgtgtcaagtgttgtgtctggtgtccggacaggtccgcgcctgtgcttcatagatagaactaacctggattt |
30107538 |
T |
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| Q |
107 |
agagtagagtccttccattgaaggagtagcagatgtcacagtaaccaaatgcaaatcccaatccttctccacacccggaaacaacctcaaaaacttcgaa |
206 |
Q |
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| T |
30107537 |
agagtagagtccttccattgaaggagtagcagatgtcacagtaaccaaatgcaaatcccaatccttctccacacccggaaacaacctcaaaaacttcgaa |
30107438 |
T |
|
| Q |
207 |
taagcctccgacgtttcagccacacccatcaaccaaaccttctcgccataaacctccaacaatctccccaactccgacacaacaaacttaacacctcccc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||| | |
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| T |
30107437 |
taagcctccgacgtttcagccacacccatcaaccaaaccttctcaccataaacctccaacaatctccccaactccgacacaacaaacttaatacatccac |
30107338 |
T |
|
| Q |
307 |
catccacatcatccccaaccaaaacctcaatctctccaaacccaacaacaacaccagcacccaaacatttcttcacctcacaccccacttccttaaacct |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30107337 |
catccacatcatccccaaccaaaacctcaatctctccaaacccaacaacaacaccagcacccaaacatttctccacctcacaccccacttccttaaacct |
30107238 |
T |
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| Q |
407 |
caaacccatcttctcctcactcccaccatccttaacaaactcgacaatctccttttcaacacacacaacactcaaaccagacatcccaggtggaaacaaa |
506 |
Q |
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| T |
30107237 |
caaacccatcttctcctcactcccaccatccttaacaaactcgacaatctccttttcaacacacacaacactcaaaccagacatcccaggtggaaacaaa |
30107138 |
T |
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| Q |
507 |
ccaccacctaaacccttttgtaacaac |
533 |
Q |
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| T |
30107137 |
ccaccacctaaacccttttgtaacaac |
30107111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0168 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: scaffold0168
Description:
Target: scaffold0168; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 377 - 515
Target Start/End: Complemental strand, 28553 - 28415
Alignment:
| Q |
377 |
cttcacctcacaccccacttccttaaacctcaaacccatcttctcctcactcccaccatccttaacaaactcgacaatctccttttcaacacacacaaca |
476 |
Q |
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|||||||||||| |||| |||| |||||||||||||||| ||||| | ||||||||| | ||||||||||| ||||||||||| |||| || |||||| |
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| T |
28553 |
cttcacctcacaacccaattccataaacctcaaacccatattctctttactcccaccttgcttaacaaacttaacaatctccttatcaaaactcacaact |
28454 |
T |
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| Q |
477 |
ctcaaaccagacatcccaggtggaaacaaaccaccacct |
515 |
Q |
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| T |
28453 |
ctaaaacgagccatttcaggtggaaaccaaccaccacct |
28415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 97 - 202
Target Start/End: Complemental strand, 25773977 - 25773872
Alignment:
| Q |
97 |
acctggatttagagtagagtccttccattgaaggagtagcagatgtcacagtaaccaaatgcaaatcccaatccttctccacacccggaaacaacctcaa |
196 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||||||| | | |||||||||| |||| || || ||| |||||||||||||| |
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| T |
25773977 |
acctggatttagagtatagtccttccatagaaggagtagcagatgtcacaggcaaaacatgcaaatccaaatctttttcaacattaggaaacaacctcaa |
25773878 |
T |
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| Q |
197 |
aaactt |
202 |
Q |
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|||||| |
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| T |
25773877 |
aaactt |
25773872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 20691335 - 20691292
Alignment:
| Q |
17 |
aaattattatcagtatcttcgtgtcagtgttgtgtctggtgtcc |
60 |
Q |
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| T |
20691335 |
aaattattatcagtttctacgtgtcagtgttgtgtccggtgtcc |
20691292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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