View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5722-Insertion-4 (Length: 116)
Name: NF5722-Insertion-4
Description: NF5722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5722-Insertion-4 |
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| [»] chr3 (3 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0741 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0065 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold1590 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 99; Significance: 2e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 2e-49
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 27540260 - 27540370
Alignment:
| Q |
6 |
catatcaactagtattctcgcataatgttcaaacaatctctttgatgtcgcgttgtctattacaagaggggtgcccaccgcacttgcaatctcccggaga |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27540260 |
catatcaactagtattctcgcataatgttcaaacaatctctttgatgtcgcgttgtctatcacaagaggggtgcccaccgcacttgcaatctcccggaga |
27540359 |
T |
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| Q |
106 |
gtctgtcccat |
116 |
Q |
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|| ||| |||| |
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| T |
27540360 |
gtttgttccat |
27540370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 20305089 - 20305199
Alignment:
| Q |
6 |
catatcaactagtattctcgcataatgttcaaacaatctctttgatgtcgcgttgtctattacaagaggggtgcccaccgcacttgcaatctcccggaga |
105 |
Q |
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|||||||||||| |||||||| || ||| ||||||||||||||| |||||| |||||||| ||||||||||| ||||||||||||||||||||| ||||| |
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| T |
20305089 |
catatcaactagaattctcgcgtagtgtccaaacaatctctttgttgtcgcattgtctatcacaagaggggttcccaccgcacttgcaatctcctggaga |
20305188 |
T |
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| Q |
106 |
gtctgtcccat |
116 |
Q |
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|| ||| |||| |
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| T |
20305189 |
gtttgttccat |
20305199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 2290572 - 2290619
Alignment:
| Q |
69 |
aagaggggtgcccaccgcacttgcaatctcccggagagtctgtcccat |
116 |
Q |
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|||||| |||||||||||| |||||||||||||||| |||||| |||| |
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| T |
2290572 |
aagaggagtgcccaccgcaattgcaatctcccggagtgtctgttccat |
2290619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 8e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 8e-40
Query Start/End: Original strand, 6 - 116
Target Start/End: Complemental strand, 7653986 - 7653876
Alignment:
| Q |
6 |
catatcaactagtattctcgcataatgttcaaacaatctctttgatgtcgcgttgtctattacaagaggggtgcccaccgcacttgcaatctcccggaga |
105 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
7653986 |
catatcaactagtattctcacataatgtccaaacaatctctttgatgtcgtgttgtctatcacaagaggggtgcccactgcacttgcaatctcccggaga |
7653887 |
T |
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| Q |
106 |
gtctgtcccat |
116 |
Q |
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|| ||| |||| |
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| T |
7653886 |
gtttgttccat |
7653876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 16006761 - 16006801
Alignment:
| Q |
70 |
agaggggtgcccaccgcacttgcaatctcccggagagtctg |
110 |
Q |
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||||| |||||||||||||||||||||||||| || ||||| |
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| T |
16006761 |
agaggagtgcccaccgcacttgcaatctcccgaagcgtctg |
16006801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0741 (Bit Score: 71; Significance: 1e-32; HSPs: 1)
Name: scaffold0741
Description:
Target: scaffold0741; HSP #1
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 6 - 116
Target Start/End: Complemental strand, 5375 - 5265
Alignment:
| Q |
6 |
catatcaactagtattctcgcataatgttcaaacaatctctttgatgtcgcgttgtctattacaagaggggtgcccaccgcacttgcaatctcccggaga |
105 |
Q |
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|||||||||||| |||||||| || ||| ||||||||||||||| |||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
5375 |
catatcaactagaattctcgcgtagtgtccaaacaatctctttgttgtcgcattgtctatcacaagaggggttcccaccgcacttgcaatctcccggaga |
5276 |
T |
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| Q |
106 |
gtctgtcccat |
116 |
Q |
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|| ||| |||| |
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| T |
5275 |
gtttgttccat |
5265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 1e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 37635816 - 37635926
Alignment:
| Q |
6 |
catatcaactagtattctcgcataatgttcaaacaatctctttgatgtcgcgttgtctattacaagaggggtgcccaccgcacttgcaatctcccggaga |
105 |
Q |
| |
|
|||||||||||| |||||||| || ||| ||||||||||||||| |||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
37635816 |
catatcaactagaattctcgcgtagtgtccaaacaatctctttgttgtcgcattgtctatcacaagaggggttcccaccgcacttgcaatctcccggaga |
37635915 |
T |
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| Q |
106 |
gtctgtcccat |
116 |
Q |
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|| ||| |||| |
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| T |
37635916 |
gtttgttccat |
37635926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 70; Significance: 5e-32; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 70; E-Value: 5e-32
Query Start/End: Original strand, 6 - 107
Target Start/End: Complemental strand, 41359 - 41258
Alignment:
| Q |
6 |
catatcaactagtattctcgcataatgttcaaacaatctctttgatgtcgcgttgtctattacaagaggggtgcccaccgcacttgcaatctcccggaga |
105 |
Q |
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|
|||||||||||| |||||||| || ||| ||||||||||||||| |||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
41359 |
catatcaactagaattctcgcgtagtgtccaaacaatctctttgttgtcgcattgtctatcacaagaggggttcccaccgcacttgcaatctcccggaga |
41260 |
T |
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| Q |
106 |
gt |
107 |
Q |
| |
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|| |
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| T |
41259 |
gt |
41258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 5e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 5e-32
Query Start/End: Original strand, 6 - 107
Target Start/End: Complemental strand, 26176517 - 26176416
Alignment:
| Q |
6 |
catatcaactagtattctcgcataatgttcaaacaatctctttgatgtcgcgttgtctattacaagaggggtgcccaccgcacttgcaatctcccggaga |
105 |
Q |
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|
|||||||||||| |||||||| || ||| ||||||||||||||| |||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
26176517 |
catatcaactagaattctcgcgtagtgtccaaacaatctctttgttgtcgcattgtctatcacaagaggggttcccaccgcacttgcaatctcccggaga |
26176418 |
T |
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| Q |
106 |
gt |
107 |
Q |
| |
|
|| |
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|
| T |
26176417 |
gt |
26176416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 12682043 - 12682083
Alignment:
| Q |
70 |
agaggggtgcccaccgcacttgcaatctcccggagagtctg |
110 |
Q |
| |
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||||| |||||||||||||||||||||||||| || ||||| |
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| T |
12682043 |
agaggagtgcccaccgcacttgcaatctcccgaagcgtctg |
12682083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 8e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 8e-31
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 16600015 - 16600130
Alignment:
| Q |
6 |
catatcaactagtattctcgcataatgttcaaacaatctcttt-----gatgtcgcgttgtctattacaagaggggtgcccaccgcacttgcaatctccc |
100 |
Q |
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|||||||||||||| ||||||||||||| ||||||| |||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
16600015 |
catatcaactagtactctcgcataatgtccaaacaaactctttaatttgatgtcgcgttgtctatcacaagaggggtgcccactgcacttgcaatctccc |
16600114 |
T |
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| Q |
101 |
ggagagtctgtcccat |
116 |
Q |
| |
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||||||| ||| |||| |
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| T |
16600115 |
ggagagtttgttccat |
16600130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 4e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 4e-23
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 15200669 - 15200779
Alignment:
| Q |
6 |
catatcaactagtattctcgcataatgttcaaacaatctctttgatgtcgcgttgtctattacaagaggggtgcccaccgcacttgcaatctcccggaga |
105 |
Q |
| |
|
|||||| ||||| ||||| ||||||||| ||||| || |||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||| || |
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| T |
15200669 |
catatcgactagaattcttgcataatgtctaaacagtcgctttgacgtcgcattgtcgatcacaagaggggtgcccaccgcacttgcaatctcccgaagt |
15200768 |
T |
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| Q |
106 |
gtctgtcccat |
116 |
Q |
| |
|
|||||| |||| |
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|
| T |
15200769 |
gtctgttccat |
15200779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 15219651 - 15219761
Alignment:
| Q |
6 |
catatcaactagtattctcgcataatgttcaaacaatctctttgatgtcgcgttgtctattacaagaggggtgcccaccgcacttgcaatctcccggaga |
105 |
Q |
| |
|
|||||| ||||| ||||| ||||||||| |||| | || |||||| | || ||||| || ||||||||||||||||||||||||||||||||||| || |
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| T |
15219651 |
catatcgactagaattcttgcataatgtccaaatagtcgctttgacgacgaattgtcgatcacaagaggggtgcccaccgcacttgcaatctcccgaagt |
15219750 |
T |
|
| Q |
106 |
gtctgtcccat |
116 |
Q |
| |
|
|||||| |||| |
|
|
| T |
15219751 |
gtctgttccat |
15219761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 12398396 - 12398464
Alignment:
| Q |
6 |
catatcaactagtattctcgcataatgttcaaacaatctctttgatgtcgcgttgtctattacaagagg |
74 |
Q |
| |
|
||||||||| || ||||| ||||||||| ||||||| | ||||| |||||||||||||| |||||||| |
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| T |
12398396 |
catatcaacaagaattcttgcataatgtccaaacaaacgctttgtcgtcgcgttgtctatcacaagagg |
12398464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1590 (Bit Score: 31; Significance: 0.000000009; HSPs: 1)
Name: scaffold1590
Description:
Target: scaffold1590; HSP #1
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 1326 - 1280
Alignment:
| Q |
52 |
gtcgcgttgtctattacaagaggggtgcccaccgcacttgcaatctc |
98 |
Q |
| |
|
||||| ||||| || | |||||||||||||||||||||||||||||| |
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|
| T |
1326 |
gtcgccttgtcaatcaaaagaggggtgcccaccgcacttgcaatctc |
1280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 203631 - 203671
Alignment:
| Q |
70 |
agaggggtgcccaccgcacttgcaatctcccggagagtctg |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || ||||| |
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| T |
203631 |
agaggagtgcccaccgcacttgcaatctcccgaagcgtctg |
203671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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