View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5722_high_10 (Length: 299)

Name: NF5722_high_10
Description: NF5722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5722_high_10
NF5722_high_10
[»] chr6 (6 HSPs)
chr6 (9-289)||(6865223-6865503)
chr6 (5-75)||(31144694-31144764)
chr6 (13-74)||(30416922-30416983)
chr6 (4-60)||(32006914-32006970)
chr6 (13-62)||(1520911-1520960)
chr6 (13-73)||(32828856-32828916)
[»] chr7 (7 HSPs)
chr7 (5-66)||(31448371-31448432)
chr7 (13-67)||(10248809-10248863)
chr7 (5-73)||(28885482-28885550)
chr7 (5-73)||(19989079-19989147)
chr7 (81-178)||(47270670-47270768)
chr7 (92-184)||(23311526-23311619)
chr7 (5-73)||(9077532-9077600)
[»] chr5 (13 HSPs)
chr5 (1-73)||(21743014-21743086)
chr5 (115-187)||(25256989-25257061)
chr5 (115-187)||(25320779-25320851)
chr5 (70-183)||(33639585-33639699)
chr5 (90-178)||(5355450-5355539)
chr5 (13-62)||(27788487-27788536)
chr5 (115-183)||(4518054-4518122)
chr5 (115-183)||(15711860-15711932)
chr5 (90-183)||(2883930-2884024)
chr5 (19-65)||(41328616-41328662)
chr5 (142-183)||(18016282-18016323)
chr5 (3-73)||(3103157-3103227)
chr5 (13-62)||(16499352-16499401)
[»] chr4 (12 HSPs)
chr4 (1-73)||(4473058-4473130)
chr4 (5-73)||(32564829-32564897)
chr4 (108-184)||(25200525-25200602)
chr4 (90-187)||(19904178-19904276)
chr4 (8-73)||(7209068-7209133)
chr4 (90-166)||(56269337-56269414)
chr4 (5-73)||(14613564-14613631)
chr4 (92-183)||(32150033-32150125)
chr4 (5-67)||(22198197-22198259)
chr4 (127-176)||(35478819-35478868)
chr4 (104-180)||(23119354-23119428)
chr4 (115-183)||(31264590-31264658)
[»] chr2 (14 HSPs)
chr2 (9-67)||(43939443-43939501)
chr2 (5-73)||(12457025-12457093)
chr2 (5-66)||(9154142-9154203)
chr2 (8-74)||(41877565-41877629)
chr2 (5-73)||(12890272-12890340)
chr2 (7-67)||(33810626-33810686)
chr2 (115-178)||(24665281-24665344)
chr2 (5-56)||(39028779-39028830)
chr2 (5-67)||(14949241-14949303)
chr2 (3-37)||(19477210-19477244)
chr2 (1-55)||(38376600-38376654)
chr2 (14-74)||(21924835-21924895)
chr2 (90-165)||(29239109-29239185)
chr2 (5-81)||(38985133-38985209)
[»] chr1 (11 HSPs)
chr1 (4-73)||(6951038-6951106)
chr1 (5-71)||(46836379-46836445)
chr1 (115-183)||(8711011-8711080)
chr1 (7-62)||(10170464-10170519)
chr1 (115-181)||(16242217-16242283)
chr1 (90-166)||(35460563-35460640)
chr1 (13-73)||(7255134-7255194)
chr1 (91-183)||(42080261-42080353)
chr1 (5-62)||(11248650-11248707)
chr1 (13-74)||(24679109-24679170)
chr1 (13-73)||(6380166-6380226)
[»] chr8 (12 HSPs)
chr8 (4-63)||(24802565-24802624)
chr8 (118-190)||(22593922-22593994)
chr8 (5-63)||(1673907-1673965)
chr8 (115-181)||(5988078-5988144)
chr8 (5-74)||(38125583-38125652)
chr8 (5-73)||(15196500-15196568)
chr8 (90-183)||(32957596-32957695)
chr8 (115-166)||(40468452-40468503)
chr8 (97-178)||(9195876-9195959)
chr8 (5-73)||(36430431-36430499)
chr8 (91-153)||(33709221-33709283)
chr8 (13-73)||(4410796-4410856)
[»] chr3 (9 HSPs)
chr3 (90-183)||(24486224-24486318)
chr3 (115-181)||(41351494-41351560)
chr3 (5-66)||(42380558-42380619)
chr3 (5-66)||(42409272-42409333)
chr3 (5-73)||(33896660-33896728)
chr3 (107-182)||(40493931-40494007)
chr3 (115-183)||(49341145-49341213)
chr3 (142-185)||(39396922-39396965)
chr3 (115-171)||(4698934-4698990)
[»] scaffold0009 (1 HSPs)
scaffold0009 (8-75)||(143361-143428)
[»] scaffold0263 (1 HSPs)
scaffold0263 (19-73)||(13373-13427)
[»] scaffold0002 (1 HSPs)
scaffold0002 (19-73)||(92001-92055)
[»] scaffold0005 (1 HSPs)
scaffold0005 (5-73)||(203745-203812)


Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 289
Target Start/End: Original strand, 6865223 - 6865503
Alignment:
Q  9 tccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagtaatagttatgggacacgcttagtggtaggatccact 108  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||| ||||| ||||||||||||||||||| ||| |||| |||||    
T  6865223 tccatatatctaagcacccttttattagatgcaaaggatgcttacatacagggacagagggagtagtagttatgggacacgcttaatggcaggacccact 6865322  T
Q  109 acatactttttgtatctatctctcgctaaataacattgtccatttatttttagcaaatagagaggatcttaactccaaatgttaaaaactcatttgaata 208  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6865323 acatactttttatatctatctctcgctaaataacattgttcatttatttttagcaaatagagaggatgttaactccaaatgttaaaaactcatttgaata 6865422  T
Q  209 tattttgtccttcatgagaagtgggattggctacaatgtaatgtgcaaattgacttcacaataaaacataacttggatatt 289  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6865423 tattttgtccttcatgagaagtgcgattggctacaatgtaatgtgcaaattgacttcacaataaaacataacttggatatt 6865503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 31144764 - 31144694
Alignment:
Q  5 tccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagtaat 75  Q
    ||||||| |||||  |||||||||||||||||| | |||||||||||| ||| |||||||||| |||||||    
T  31144764 tccgtccttatatagaagcacccttttattagaaggaaagagtgcttatatatagggacggagggagtaat 31144694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 30416983 - 30416922
Alignment:
Q  13 tatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagtaa 74  Q
    ||||| |||||| |||||||||||| ||||||||| |||||||| |||||||||| ||||||    
T  30416983 tatatgtaagcatccttttattagaggcaaagagttcttacatatagggacggagggagtaa 30416922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 32006914 - 32006970
Alignment:
Q  4 atccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagg 60  Q
    |||||||| |||||||||| ||||||||||||||||||||  ||||||||| |||||    
T  32006914 atccgtccctatatctaagtacccttttattagatgcaaacggtgcttacacacagg 32006970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 1520960 - 1520911
Alignment:
Q  13 tatatctaagcacccttttattagatgcaaagagtgcttacatacaggga 62  Q
    ||||||||||||||||||||||||| |||||| ||||||| ||| |||||    
T  1520960 tatatctaagcacccttttattagaggcaaagtgtgcttaaatataggga 1520911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 32828916 - 32828856
Alignment:
Q  13 tatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagta 73  Q
    ||||||||| || ||||||||||||||||||  ||||||||||||| ||| |||| |||||    
T  32828916 tatatctaaacatccttttattagatgcaaatggtgcttacatacaaggatggagggagta 32828856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 31448432 - 31448371
Alignment:
Q  5 tccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacgga 66  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  31448432 tccgtccctatatctaagcacccttttattagatgcaaagggtgcttacatatagggacgga 31448371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 10248863 - 10248809
Alignment:
Q  13 tatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggag 67  Q
    ||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||    
T  10248863 tatatctaagcacccttttattagatgtaaagagtgcttatatagagggacggag 10248809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 28885550 - 28885482
Alignment:
Q  5 tccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagta 73  Q
    ||||||| ||||| ||||||||||||||||||| | |||  ||||||||||| ||||||||||||||||    
T  28885550 tccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatagggacggagagagta 28885482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 19989147 - 19989079
Alignment:
Q  5 tccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagta 73  Q
    ||||||| |||||||||||||| |||||||||| |||||  ||||||||||| ||| |||||| |||||    
T  19989147 tccgtccctatatctaagcaccattttattagaggcaaatggtgcttacatataggaacggagggagta 19989079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 178
Target Start/End: Original strand, 47270670 - 47270768
Alignment:
Q  81 tgggacacgcttagtggtaggatccactacatacttttt-gtatctatctctcgctaaataacattgtccatttatttttagcaaatagagaggatctt 178  Q
    |||||| | |||||||||| |||||||||| |||||||| || ||||| |||  | ||||  |||| |||||||||||| | |||||||||||||||||    
T  47270670 tgggactcacttagtggtatgatccactacctacttttttgtttctatatcttaccaaatggcattatccatttattttaaacaaatagagaggatctt 47270768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 184
Target Start/End: Original strand, 23311526 - 23311619
Alignment:
Q  92 tagtggtaggatccactacatacttttt-gtatctatctctcgctaaataacattgtccatttatttttagcaaatagagaggatcttaactcc 184  Q
    ||||||||||||||| |||||||||||| |||  |||| ||| | | ||  | || |||||||| ||||||||||| |||||||||||||||||    
T  23311526 tagtggtaggatccattacatacttttttgtacatatcactcacaacatggcgttatccatttacttttagcaaatggagaggatcttaactcc 23311619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 9077532 - 9077600
Alignment:
Q  5 tccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagta 73  Q
    ||||||| ||||| ||||||| ||||||||||| | |||||||| ||||||| |||||| ||| |||||    
T  9077532 tccgtccttatatttaagcactcttttattagagggaaagagtgtttacatatagggacagagggagta 9077600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 21743086 - 21743014
Alignment:
Q  1 ttcatccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagta 73  Q
    ||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||| | |||||||| |||||    
T  21743086 ttcatccgtccctatatctaagcactcttttattagaggcaaagagtgcttacatataaggacggagggagta 21743014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 187
Target Start/End: Original strand, 25256989 - 25257061
Alignment:
Q  115 tttttgtatctatctctcgctaaataacattgtccatttatttttagcaaatagagaggatcttaactccaaa 187  Q
    |||||||||||||||||| | |||| ||||||||||||||||||||||||||  | |||||||||||| ||||    
T  25256989 tttttgtatctatctctcacaaaatgacattgtccatttatttttagcaaatgtataggatcttaacttcaaa 25257061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 187
Target Start/End: Original strand, 25320779 - 25320851
Alignment:
Q  115 tttttgtatctatctctcgctaaataacattgtccatttatttttagcaaatagagaggatcttaactccaaa 187  Q
    |||||||||||||||||| | |||| ||||||||||||||||||||||||||  | |||||||||||| ||||    
T  25320779 tttttgtatctatctctcacaaaatgacattgtccatttatttttagcaaatgtataggatcttaacttcaaa 25320851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 183
Target Start/End: Original strand, 33639585 - 33639699
Alignment:
Q  70 agtaatagttatgggacacgcttagtggtaggatccactacatacttttt-gtatctatctctcgctaaataacattgtccatttatttttagcaaatag 168  Q
    ||||||||| ||| ||| |  |||||||||||||||| |||||||||||| |||| ||||||| || |||||||||| | |||||  |||||| ||||      
T  33639585 agtaatagtaatgagactcatttagtggtaggatccattacatactttttcgtatttatctcttgccaaataacattattcatttgcttttagaaaatga 33639684  T
Q  169 agaggatcttaactc 183  Q
    |||||||||||||||    
T  33639685 agaggatcttaactc 33639699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 5355450 - 5355539
Alignment:
Q  90 cttagtggtaggatccactacatactttt-tgtatctatctctcgctaaataacattgtccatttatttttagcaaatagagaggatctt 178  Q
    |||| |||||||||||||||||||||||| |||||||||||||| | |||||||||| || |||| |||| | ||||| |||| ||||||    
T  5355450 cttaatggtaggatccactacatacttttttgtatctatctctcaccaaataacattatctatttcttttaaacaaatggagatgatctt 5355539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 27788487 - 27788536
Alignment:
Q  13 tatatctaagcacccttttattagatgcaaagagtgcttacatacaggga 62  Q
    |||||||||||||||||||||||||||||||  || ||||||||||||||    
T  27788487 tatatctaagcacccttttattagatgcaaaaggtacttacatacaggga 27788536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 4518122 - 4518054
Alignment:
Q  115 tttttgtatctatctctcgctaaataacattgtccatttatttttagcaaatagagaggatcttaactc 183  Q
    |||||||||||||||||| |||||| ||||| ||| |||||||| || |||| |||||||||| |||||    
T  4518122 tttttgtatctatctctcactaaatgacattctccgtttattttaagtaaatggagaggatctcaactc 4518054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 15711932 - 15711860
Alignment:
Q  115 tttttgtatctatctctcgctaaataacattgtccatttatttttagcaaata----gagaggatcttaactc 183  Q
    ||||||||| |||||||| |||||| ||||| |||||||||||||| ||||||    ||||||||||||||||    
T  15711932 tttttgtatatatctctcactaaatgacattatccatttatttttaacaaatatattgagaggatcttaactc 15711860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 183
Target Start/End: Original strand, 2883930 - 2884024
Alignment:
Q  90 cttagtggtaggatccactacatacttttt-gtatctatctctcgctaaataacattgtccatttatttttagcaaatagagaggatcttaactc 183  Q
    ||||||||||||||||| || ||| ||||| |||| ||||| || | |||| ||||| |||||||||||| |||||||| |||| ||||| ||||    
T  2883930 cttagtggtaggatccattatataattttttgtatatatctttcaccaaatgacattctccatttattttaagcaaataaagagtatctttactc 2884024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 41328616 - 41328662
Alignment:
Q  19 taagcacccttttattagatgcaaagagtgcttacatacagggacgg 65  Q
    ||||||||||||||||||| | |||| ||||||||||||||||||||    
T  41328616 taagcacccttttattagagggaaagggtgcttacatacagggacgg 41328662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 18016323 - 18016282
Alignment:
Q  142 cattgtccatttatttttagcaaatagagaggatcttaactc 183  Q
    ||||||||||||| ||||||||||| ||||||||||||||||    
T  18016323 cattgtccatttaattttagcaaatggagaggatcttaactc 18016282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 3103157 - 3103227
Alignment:
Q  3 catccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagta 73  Q
    ||||||| | ||||| ||| ||||||||||||||| | |||| ||||||| ||| ||||||| ||||||||    
T  3103157 catccgttcctatatataaacacccttttattagaggtaaagggtgcttatatatagggacgaagagagta 3103227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 16499352 - 16499401
Alignment:
Q  13 tatatctaagcacccttttattagatgcaaagagtgcttacatacaggga 62  Q
    ||||| |||||||||||||||||||||||||  ||| |||||| ||||||    
T  16499352 tatatttaagcacccttttattagatgcaaatggtgtttacatgcaggga 16499401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 4473130 - 4473058
Alignment:
Q  1 ttcatccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagta 73  Q
    |||||| |||| ||||| |||||||| |||||||||| |||||||||||||||||| ||||||||||||||||    
T  4473130 ttcatctgtccctatatgtaagcacctttttattagaggcaaagagtgcttacatatagggacggagagagta 4473058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 32564897 - 32564829
Alignment:
Q  5 tccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagta 73  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||||||||||| |||||||||| |||||    
T  32564897 tccgtccctatatgtaagcacccttttattagaggcaaagagtgcttacatatagggacggagggagta 32564829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 25200525 - 25200602
Alignment:
Q  108 tacatacttt-ttgtatctatctctcgctaaataacattgtccatttatttttagcaaatagagaggatcttaactcc 184  Q
    |||||||||| |||||| |||||||| ||||||   |||||||||||||||||| |||||||||| ||||||||||||    
T  25200525 tacatactttcttgtatttatctctcactaaatgggattgtccatttatttttaccaaatagagatgatcttaactcc 25200602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 187
Target Start/End: Complemental strand, 19904276 - 19904178
Alignment:
Q  90 cttagtggtaggatccactacatacttttt-gtatctatctctcgctaaataacattgtccatttatttttagcaaatagagaggatcttaactccaaa 187  Q
    ||||||||||||| | | |||| ||||||| ||||||| |||||   |||| | ||| || ||||||||||||||||||||||||||||||||| ||||    
T  19904276 cttagtggtaggaccgagtacacactttttcgtatctacctctcagcaaatgatattatcaatttatttttagcaaatagagaggatcttaactacaaa 19904178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 7209068 - 7209133
Alignment:
Q  8 gtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagta 73  Q
    |||| |||||||||||||  ||||||||||  ||||||||||||||||| |||||||||| |||||    
T  7209068 gtccctatatctaagcacttttttattagagacaaagagtgcttacatatagggacggagggagta 7209133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 56269414 - 56269337
Alignment:
Q  90 cttagtggtaggatccactacatact-ttttgtatctatctctcgctaaataacattgtccatttatttttagcaaat 166  Q
    ||||||||||||| |||||||||||| |||||||| |||||||| | |||| ||||| |||||||| ||| |||||||    
T  56269414 cttagtggtaggacccactacatacttttttgtatttatctctcaccaaatgacattatccatttactttaagcaaat 56269337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 14613564 - 14613631
Alignment:
Q  5 tccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagta 73  Q
    ||||||| ||| |||||| |||||||||||||||  |||| ||| ||||||||||| ||||||||||||    
T  14613564 tccgtccctatgtctaagtacccttttattagatataaag-gtgattacatacaggaacggagagagta 14613631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 183
Target Start/End: Complemental strand, 32150125 - 32150033
Alignment:
Q  92 tagtggtaggatccactacatacttttt-gtatctatctctcgctaaataacattgtccatttatttttagcaaatagagaggatcttaactc 183  Q
    |||| |||||| |||||||||| ||||| |||| |||||||| | ||||  || | |||||||| ||||||||||| |||| |||||||||||    
T  32150125 tagtagtaggacccactacatattttttagtatatatctctcaccaaatggcaatatccatttacttttagcaaatggagatgatcttaactc 32150033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 22198259 - 22198197
Alignment:
Q  5 tccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggag 67  Q
    ||||||| ||||| ||| ||||||||||||||||| |||| ||| |||||| | |||||||||    
T  22198259 tccgtccttatatttaaacacccttttattagatgtaaagggtgtttacatgctgggacggag 22198197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 35478868 - 35478819
Alignment:
Q  127 tctctcgctaaataacattgtccatttatttttagcaaatagagaggatc 176  Q
    |||||| |||||||||||| |||||||||||| | ||||| |||||||||    
T  35478868 tctctcactaaataacattctccatttattttaaacaaatggagaggatc 35478819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 23119428 - 23119354
Alignment:
Q  104 ccactacatactttttgtatctatctctcgctaaataacattgtccatttatttttagcaaatagagaggatcttaa 180  Q
    |||||||||||||||| ||| ||||||||  |||||  ||||||||||||| ||||| ||||| ||||| |||||||    
T  23119428 ccactacatactttttctatttatctctcaataaat-gcattgtccattta-ttttaacaaatggagagaatcttaa 23119354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 31264590 - 31264658
Alignment:
Q  115 tttttgtatctatctctcgctaaataacattgtccatttatttttagcaaatagagaggatcttaactc 183  Q
    ||||||| ||||||||||   |||| ||||| ||||||| |||| || |||| ||||||||||||||||    
T  31264590 tttttgtgtctatctctcatcaaatgacattatccatttgttttaagtaaatggagaggatcttaactc 31264658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 43939501 - 43939443
Alignment:
Q  9 tccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggag 67  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||    
T  43939501 tccatatatctaagcacccttttattagaggcaaatagtgcttacatatagggacggag 43939443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 12457025 - 12457093
Alignment:
Q  5 tccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagta 73  Q
    ||||||| ||||||||||||||||||||||||| |||||| ||||||||||| |||||| ||| |||||    
T  12457025 tccgtccctatatctaagcacccttttattagaggcaaagggtgcttacatatagggacagagggagta 12457093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 9154203 - 9154142
Alignment:
Q  5 tccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacgga 66  Q
    ||||||| ||||||||||||||||||||||||| | |||| ||| ||||||| |||||||||    
T  9154203 tccgtccctatatctaagcacccttttattagaggaaaagggtggttacatatagggacgga 9154142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 41877565 - 41877629
Alignment:
Q  8 gtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagtaa 74  Q
    |||| ||||||||||||| ||||||||||| | |||||||||||||||  |||||||||| ||||||    
T  41877565 gtccctatatctaagcacacttttattagaagaaaagagtgcttacat--agggacggagggagtaa 41877629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 12890272 - 12890340
Alignment:
Q  5 tccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagta 73  Q
    ||||||| |||||||||||| |||||||||||| | |||  ||||||||||  ||||| ||||||||||    
T  12890272 tccgtccctatatctaagcatccttttattagaggaaaatggtgcttacatttagggatggagagagta 12890340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 33810626 - 33810686
Alignment:
Q  7 cgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggag 67  Q
    ||||| ||||| ||||||||||||||||||| | |||  ||||||||||| ||||||||||    
T  33810626 cgtccctatatgtaagcacccttttattagaggaaaattgtgcttacatatagggacggag 33810686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 178
Target Start/End: Original strand, 24665281 - 24665344
Alignment:
Q  115 tttttgtatctatctctcgctaaataacattgtccatttatttttagcaaatagagaggatctt 178  Q
    |||||||||||||||||| |||||||  ||| | |||||||||| | |||||||||| ||||||    
T  24665281 tttttgtatctatctctcactaaatagaattattcatttattttaaacaaatagagatgatctt 24665344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 39028830 - 39028779
Alignment:
Q  5 tccgtccatatatctaagcacccttttattagatgcaaagagtgcttacata 56  Q
    ||||||| |||||| |||||||||||| |||||||||||  |||||||||||    
T  39028830 tccgtccctatatcaaagcacccttttgttagatgcaaatggtgcttacata 39028779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 14949241 - 14949303
Alignment:
Q  5 tccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggag 67  Q
    ||||||| || |||||||||| ||||||||||| |||||  ||||||||||| || |||||||    
T  14949241 tccgtccctacatctaagcactcttttattagaggcaaatggtgcttacatatagagacggag 14949303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 19477244 - 19477210
Alignment:
Q  3 catccgtccatatatctaagcacccttttattaga 37  Q
    ||||||||| |||||||||||||||||||||||||    
T  19477244 catccgtccctatatctaagcacccttttattaga 19477210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 38376654 - 38376600
Alignment:
Q  1 ttcatccgtccatatatctaagcacccttttattagatgcaaagagtgcttacat 55  Q
    ||||||||| | || |||||||||||||||||||||| ||||| | |||||||||    
T  38376654 ttcatccgttcttacatctaagcacccttttattagaggcaaataatgcttacat 38376600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 21924895 - 21924835
Alignment:
Q  14 atatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagtaa 74  Q
    |||| ||||||||||||||||||| | |||  ||||||| ||| |||||||||| ||||||    
T  21924895 atatttaagcacccttttattagaggtaaaaggtgcttatatatagggacggagggagtaa 21924835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 29239185 - 29239109
Alignment:
Q  90 cttagtggtaggatccactacatacttttt-gtatctatctctcgctaaataacattgtccatttatttttagcaaa 165  Q
    |||| ||||| |||| |||||||| ||||| ||||| ||||||| |  ||| |||||||||||||| ||||||||||    
T  29239185 cttaatggtaagatctactacatatttttttgtatccatctctcacagaatgacattgtccatttaattttagcaaa 29239109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 38985133 - 38985209
Alignment:
Q  5 tccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagtaatagttat 81  Q
    ||||||| ||||| ||||||| ||||||||||| | |||  ||||||| ||| |||||||||  |||||||| ||||    
T  38985133 tccgtccctatatataagcactcttttattagagggaaatggtgcttatatatagggacggaaggagtaatatttat 38985209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 6951106 - 6951038
Alignment:
Q  4 atccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagta 73  Q
    |||||||| ||||||||||||||||||||||||| |||||| ||||||||||| | ||||||||||||||    
T  6951106 atccgtccttatatctaagcacccttttattagaggcaaagtgtgcttacatata-ggacggagagagta 6951038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 46836445 - 46836379
Alignment:
Q  5 tccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagag 71  Q
    ||||||| ||||||||||||||||||||||||| |||||  ||||||||||| | ||||||||||||    
T  46836445 tccgtccctatatctaagcacccttttattagaggcaaaatgtgcttacatataaggacggagagag 46836379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 8711011 - 8711080
Alignment:
Q  115 tttttgtatctatctctcgctaaataacattgtccatttattttt-agcaaatagagaggatcttaactc 183  Q
    |||||||||||||||||| | |||| ||||| ||||||||||||| ||||||| ||||||||||| ||||    
T  8711011 tttttgtatctatctctcaccaaatgacattatccatttatttttaagcaaatggagaggatcttgactc 8711080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 10170464 - 10170519
Alignment:
Q  7 cgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacaggga 62  Q
    |||||||||||||||||||| ||||||||||||||||  || |||||||| |||||    
T  10170464 cgtccatatatctaagcaccattttattagatgcaaatggtacttacataaaggga 10170519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 16242283 - 16242217
Alignment:
Q  115 tttttgtatctatctctcgctaaataacattgtccatttatttttagcaaatagagaggatcttaac 181  Q
    |||||||||||||||||| | |||| |||||||||||| ||||| |||||||  ||| |||||||||    
T  16242283 tttttgtatctatctctcaccaaatgacattgtccattgattttaagcaaatgaagacgatcttaac 16242217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 35460640 - 35460563
Alignment:
Q  90 cttagtggtaggatccactacatacttttt-gtatctatctctcgctaaataacattgtccatttatttttagcaaat 166  Q
    ||||||| ||||| ||| || ||||||||| ||||||||||||| |||||| | ||| ||||||||||||||| ||||    
T  35460640 cttagtgataggacccattatatacttttttgtatctatctctcactaaatgagattctccatttatttttagtaaat 35460563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 7255194 - 7255134
Alignment:
Q  13 tatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagta 73  Q
    ||||| ||||||||||||||||||| | |||  ||||||||||| |||||||||| |||||    
T  7255194 tatatgtaagcacccttttattagagggaaaatgtgcttacatatagggacggagggagta 7255134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 42080353 - 42080261
Alignment:
Q  91 ttagtggtaggatccactacatactttttgtatctatctctcgctaaataacattgtccatttatttttagcaaatagagaggatcttaactc 183  Q
    ||||||| || ||||||| |||| |||| ||||||||||||| | ||||   ||| |||||||||||||||||||| || |  ||||||||||    
T  42080353 ttagtggcagaatccacttcatatttttggtatctatctctcaccaaattgaattttccatttatttttagcaaatggaaaatatcttaactc 42080261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 11248650 - 11248707
Alignment:
Q  5 tccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacaggga 62  Q
    ||||||| |||||||||||||  |||||||||| |||||  ||||||||||| |||||    
T  11248650 tccgtccctatatctaagcactattttattagaggcaaatggtgcttacatataggga 11248707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 24679109 - 24679170
Alignment:
Q  13 tatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagtaa 74  Q
    ||||| ||||||||||||||||| | | |||||||| ||||||  |||||||||| ||||||    
T  24679109 tatatttaagcacccttttattaaagggaaagagtgtttacatttagggacggagggagtaa 24679170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 6380166 - 6380226
Alignment:
Q  13 tatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagta 73  Q
    |||||||||||||||||||||||||  ||||  |||||||| || ||| |||||| |||||    
T  6380166 tatatctaagcacccttttattagagacaaaaggtgcttacctagaggaacggagggagta 6380226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 24802624 - 24802565
Alignment:
Q  4 atccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggac 63  Q
    |||||||| |||||||||||||||||||||||||||||||  ||||||||||| ||||||    
T  24802624 atccgtccctatatctaagcacccttttattagatgcaaaaggtgcttacatatagggac 24802565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 22593994 - 22593922
Alignment:
Q  118 ttgtatctatctctcgctaaataacattgtccatttatttttagcaaatagagaggatcttaactccaaatgt 190  Q
    ||||||||||| ||  | |||| |||||||||||||||||| ||||||| |||||||||||||||| ||||||    
T  22593994 ttgtatctatcgcttaccaaatgacattgtccatttattttaagcaaatggagaggatcttaactcaaaatgt 22593922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 1673907 - 1673965
Alignment:
Q  5 tccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggac 63  Q
    ||||||| | ||||||||||||||||||| |||||||||  ||||||||||||||||||    
T  1673907 tccgtccttgtatctaagcacccttttatcagatgcaaaaggtgcttacatacagggac 1673965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 5988144 - 5988078
Alignment:
Q  115 tttttgtatctatctctcgctaaataacattgtccatttatttttagcaaatagagaggatcttaac 181  Q
    ||||| |||||||||||| |||||| | ||||| |||||||||| ||||||| ||||||||||||||    
T  5988144 tttttatatctatctctcactaaatgatattgttcatttattttaagcaaattgagaggatcttaac 5988078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 38125652 - 38125583
Alignment:
Q  5 tccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagtaa 74  Q
    ||||||| ||||| ||||||||||||||||||| |||||  ||||||||||| | |||||||| ||||||    
T  38125652 tccgtccctatatgtaagcacccttttattagaggcaaaaggtgcttacatatatggacggagggagtaa 38125583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 15196568 - 15196500
Alignment:
Q  5 tccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagta 73  Q
    ||||||| ||||||||||||||||||||||||| | |||   |||||||||| |||||||||| |||||    
T  15196568 tccgtccctatatctaagcacccttttattagaagaaaaagatgcttacatatagggacggagggagta 15196500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 183
Target Start/End: Complemental strand, 32957695 - 32957596
Alignment:
Q  90 cttagtggtaggatccactacatact-ttttgtatctatctctcgctaa-----ataacattgtccatttatttttagcaaatagagaggatcttaactc 183  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| ||||     || | ||| ||| |||||||||||||||| |||| ||| |||||||    
T  32957695 cttagtggtaagatccactacatacttttttgtatctatctctcactaaatgatattatattatccttttatttttagcaaatggagatgattttaactc 32957596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 40468503 - 40468452
Alignment:
Q  115 tttttgtatctatctctcgctaaataacattgtccatttatttttagcaaat 166  Q
    ||||||||||||||||||  ||||| ||||| ||||||||||||||||||||    
T  40468503 tttttgtatctatctctcattaaatgacattatccatttatttttagcaaat 40468452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 178
Target Start/End: Complemental strand, 9195959 - 9195876
Alignment:
Q  97 gtaggatccactacatacttttt--gtatctatctctcgctaaataacattgtccatttatttttagcaaatagagaggatctt 178  Q
    |||||||||| || |||||||||  |||| |||||||| | |||| | ||| |||||||| ||||||||||| |||||||||||    
T  9195959 gtaggatccattatatactttttttgtatttatctctcacaaaatgatattatccatttacttttagcaaatggagaggatctt 9195876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 36430431 - 36430499
Alignment:
Q  5 tccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagta 73  Q
    ||||||| ||||| ||||||||||||||||||| |||    ||||||||||| |||||||||| |||||    
T  36430431 tccgtccctatatttaagcacccttttattagaggcaccttgtgcttacatatagggacggagggagta 36430499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 153
Target Start/End: Original strand, 33709221 - 33709283
Alignment:
Q  91 ttagtggtaggatccactacatactttttgtatctatctctcgctaaataacattgtccattt 153  Q
    |||||||||| | |||||||||  ||||||||||||||| || | |||||||||| |||||||    
T  33709221 ttagtggtagaacccactacatgttttttgtatctatctatcaccaaataacattatccattt 33709283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 4410856 - 4410796
Alignment:
Q  13 tatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagta 73  Q
    ||||| ||||||| |||||||||||  ||||| ||||||| ||| |||||||||| |||||    
T  4410856 tatatataagcactcttttattagagacaaagggtgcttatatatagggacggagggagta 4410796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 183
Target Start/End: Complemental strand, 24486318 - 24486224
Alignment:
Q  90 cttagtggtaggatccactacatacttttt-gtatctatctctcgctaaataacattgtccatttatttttagcaaatagagaggatcttaactc 183  Q
    |||||| ||| || |||| || |||||||| |||| ||||| || | |||||||||| | ||||||||||||||||||||||||||| |||||||    
T  24486318 cttagtagtaagacccacgacttactttttcgtatatatctatcaccaaataacattattcatttatttttagcaaatagagaggattttaactc 24486224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 41351494 - 41351560
Alignment:
Q  115 tttttgtatctatctctcgctaaataacattgtccatttatttttagcaaatagagaggatcttaac 181  Q
    ||||||| |||||||||| | |||| ||||| | |||||||||||||||||||||||| ||||||||    
T  41351494 tttttgtgtctatctctcacaaaatgacattattcatttatttttagcaaatagagagaatcttaac 41351560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 42380619 - 42380558
Alignment:
Q  5 tccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacgga 66  Q
    ||||||| |||||||||  |||||||||||||| |||||| ||||||||||| |||||||||    
T  42380619 tccgtccctatatctaaaaacccttttattagaggcaaagggtgcttacatatagggacgga 42380558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 42409333 - 42409272
Alignment:
Q  5 tccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacgga 66  Q
    ||||||| |||||||||  |||||||||||||| |||||| ||||||||||| |||||||||    
T  42409333 tccgtccctatatctaaaaacccttttattagaggcaaagggtgcttacatatagggacgga 42409272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 33896660 - 33896728
Alignment:
Q  5 tccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagta 73  Q
    ||||||| ||||| |||||||||||| |||||| |||||  ||| ||||||| |||||||||| |||||    
T  33896660 tccgtccctatatataagcaccctttcattagaggcaaatggtgtttacatatagggacggagggagta 33896728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 40493931 - 40494007
Alignment:
Q  107 ctacatacttttt-gtatctatctctcgctaaataacattgtccatttatttttagcaaatagagaggatcttaact 182  Q
    ||||||||||||| |||| ||| ||||   |||||||||||||||||| |||| ||||||| ||||||||| |||||    
T  40493931 ctacatacttttttgtatttatttctcatcaaataacattgtccatttgttttaagcaaatggagaggatcataact 40494007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 49341213 - 49341145
Alignment:
Q  115 tttttgtatctatctctcgctaaataacattgtccatttatttttagcaaatagagaggatcttaactc 183  Q
    ||||||||| |||||||  | |||| |||||||||||||||||| |||||||  ||| |||||||||||    
T  49341213 tttttgtatatatctcttcccaaatgacattgtccatttattttaagcaaatgaagaagatcttaactc 49341145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 39396965 - 39396922
Alignment:
Q  142 cattgtccatttatttttagcaaatagagaggatcttaactcca 185  Q
    |||| |||||||||||||| |||||||||||||| |||||||||    
T  39396965 cattatccatttatttttaacaaatagagaggattttaactcca 39396922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 4698990 - 4698934
Alignment:
Q  115 tttttgtatctatctctcgctaaataacattgtccatttatttttagcaaatagaga 171  Q
    |||||||||||||||||| | |||| ||||| || |||||||||||| |||| ||||    
T  4698990 tttttgtatctatctctcaccaaatgacattatctatttatttttagtaaatggaga 4698934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 143361 - 143428
Alignment:
Q  8 gtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagtaat 75  Q
    |||| ||||| ||| ||||||||||||||| ||||||  |||||||||| |||||||||| |||||||    
T  143361 gtccctatatgtaaacacccttttattagaggcaaaggatgcttacatatagggacggagggagtaat 143428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 13427 - 13373
Alignment:
Q  19 taagcacccttttattagatgcaaagagtgcttacatacagggacggagagagta 73  Q
    ||||||||||| |||||||||||||  ||||||||||| |||||||||| |||||    
T  13427 taagcacccttctattagatgcaaaaggtgcttacatatagggacggagggagta 13373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 92055 - 92001
Alignment:
Q  19 taagcacccttttattagatgcaaagagtgcttacatacagggacggagagagta 73  Q
    ||||||||||| |||||||||||||  ||||||||||| |||||||||| |||||    
T  92055 taagcacccttctattagatgcaaaaggtgcttacatatagggacggagggagta 92001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 203812 - 203745
Alignment:
Q  5 tccgtccatatatctaagcacccttttattagatgcaaagagtgcttacatacagggacggagagagta 73  Q
    ||||||| ||| |||||| |||||||||||||||  |||| ||| ||||||||||| ||||||||||||    
T  203812 tccgtccctatgtctaagtacccttttattagatataaag-gtgattacatacaggaacggagagagta 203745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University