View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5722_high_13 (Length: 273)
Name: NF5722_high_13
Description: NF5722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5722_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 3 - 257
Target Start/End: Original strand, 54040340 - 54040585
Alignment:
| Q |
3 |
atcaatcatacacaaaatttcaactcagaaaagcaatcaacatcaagaacataaaaccccaaacataaatcacatgcaagttcgaatttttataataacc |
102 |
Q |
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| T |
54040340 |
atcaatgatacacaaaatttcaactcagaaaagcaatcaacatcaagaacataaaaccccaaacataaatcacatgcaagttcgaattttgataataacc |
54040439 |
T |
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| Q |
103 |
cagcaaataaaacaacatcaagaacataaattgaataaacaaagataaaaagaaactaacctgaagagcattcaagtgctggaggtagaatttatcagca |
202 |
Q |
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| T |
54040440 |
cagcaaataaaacaaca---------taaattgaataaagaaagataaaaagaaactaacctgaagagcattcaagtgctggaggtagaatttatcagca |
54040530 |
T |
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| Q |
203 |
gtatcattgagaaattgggaatgaaagtcaatgcaaacttttccagattgcaaac |
257 |
Q |
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| T |
54040531 |
gtatcattgagaaattgggaatgaaagtcaatgcaaagttttccagattgcaaac |
54040585 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 3484541 - 3484489
Alignment:
| Q |
204 |
tatcattgagaaattgggaatgaaagtcaatgcaaacttttccagattgcaaac |
257 |
Q |
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| T |
3484541 |
tatcattgagaaattgggaatgaaattcaaagcaaacttgtcca-attgcaaac |
3484489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 41779202 - 41779254
Alignment:
| Q |
204 |
tatcattgagaaattgggaatgaaagtcaatgcaaacttttccagattgcaaac |
257 |
Q |
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| T |
41779202 |
tatcattgagaaattgggaatgaaattcaaagcaaacttgtcca-attgcaaac |
41779254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 3276645 - 3276697
Alignment:
| Q |
204 |
tatcattgagaaattgggaatgaaagtcaatgcaaacttttccagattgcaaac |
257 |
Q |
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| T |
3276645 |
tatcattgtgaaattgggaatgaaattcaaagcaaacttatcca-attgcaaac |
3276697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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