View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5722_high_14 (Length: 255)
Name: NF5722_high_14
Description: NF5722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5722_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 55211890 - 55212130
Alignment:
| Q |
4 |
tagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatcccatcagttagcgcaagaaatccaaat |
103 |
Q |
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| T |
55211890 |
tagattaagatgagtcgtgataacttttagaactagccgagtcgccacattagtgctccttattctaaatatcctatcagtt-gcgcaagaaatccaaat |
55211988 |
T |
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| Q |
104 |
ttccatggcatcaatatatgattgcctttatgaacacttataggctttcttagacaaacgttgagaagactgctctgacttcgtcgaatgattcatgtgt |
203 |
Q |
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| T |
55211989 |
ttacatggcaacaatatatgattgcctttatgaacacttataggctttcttagacaaacgttgagaagactactctgacttcgtcgaatgattcatctgt |
55212088 |
T |
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| Q |
204 |
ttgaacttgaaataatttattttagaggtacaaaagtgatga |
245 |
Q |
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| T |
55212089 |
ttgaacttgaaataatttattttagaggtacaaaagttatga |
55212130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 30912002 - 30911921
Alignment:
| Q |
1 |
ttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatcccatca |
82 |
Q |
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| T |
30912002 |
ttctagattaaggtgagtcataataacttctagaactaaccgagtcatcacattagtactcattattctaagtatcctatca |
30911921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 42513265 - 42513346
Alignment:
| Q |
1 |
ttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatcccatca |
82 |
Q |
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| T |
42513265 |
ttctagattaaggtgagtcataataacttctagaactagatgagtcaccacattagtgctccttattctaaatatcctatca |
42513346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 38572417 - 38572488
Alignment:
| Q |
4 |
tagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatat |
75 |
Q |
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| T |
38572417 |
tagattaaggtgagtcataataacttctagaactagctgagtcagcacattagtactcattattctaaatat |
38572488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 13886535 - 13886454
Alignment:
| Q |
1 |
ttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatcccatca |
82 |
Q |
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| T |
13886535 |
ttctagattaaggtgagtcataataatttatagaactagcagagtcaccacattagtgctccttattctaactatcctatca |
13886454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 4834664 - 4834589
Alignment:
| Q |
1 |
ttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatc |
76 |
Q |
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| T |
4834664 |
ttctagattaaggtgagtcataataacttctagaacttactgagtcaccacattcgtagtcattattctaaatatc |
4834589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 8123475 - 8123394
Alignment:
| Q |
1 |
ttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatcccatca |
82 |
Q |
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| T |
8123475 |
ttctagattaaggtcagtcataataacttctagaactagatgagtcaccagattagtgctccttattctaaatatcctatca |
8123394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 671409 - 671325
Alignment:
| Q |
1 |
ttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatcccatcagtt |
85 |
Q |
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| T |
671409 |
ttctagattaaggtgagtcataataacatctagaattagccgagtcactatattaatgctccttattctaaatatcctatcagtt |
671325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 18584089 - 18584170
Alignment:
| Q |
1 |
ttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatcccatca |
82 |
Q |
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| T |
18584089 |
ttctagattaaggtgagtcataataacttttataactagctaagccaccacattaatgctccttattctaaatatcctatca |
18584170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 13087653 - 13087573
Alignment:
| Q |
2 |
tctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatcccatca |
82 |
Q |
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| T |
13087653 |
tctagattaaggtgagtcataataacttctagaactagccgagtcaccacattaatgctccttattctgaatatcctatca |
13087573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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