View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5722_high_15 (Length: 250)
Name: NF5722_high_15
Description: NF5722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5722_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 2 - 244
Target Start/End: Complemental strand, 6343499 - 6343263
Alignment:
| Q |
2 |
acttgcacttgcatgttgctgctatcagcattggacgtcatgggaagcgaatatggggtacatattgctatttacaccaacttaaaaaatgaataaaccg |
101 |
Q |
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| T |
6343499 |
acttgcacttgcatgctgcttctatcagcattggacgtcatgggaagcgaatatggggtacatatttctatttacatcaacttaaaaaatgaataaaccg |
6343400 |
T |
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| Q |
102 |
atctgaactgccgctgaaaaataccgagcaacagttaacttccgatgaattaagggaatgaacaattatgaaatgaatttgagcaatttttgaaatataa |
201 |
Q |
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| T |
6343399 |
atctgaactgccgctgaaaaatatcgagcaacagttaacttccaatgaattaagcgaatgaacaattatgaaatagatttgagcaatttttgaaata--- |
6343303 |
T |
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| Q |
202 |
taggcaaggtcgaactaaattttgcaagacctaagtataatct |
244 |
Q |
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| T |
6343302 |
--ggca-ggtcgaactaaattttgcaagacttaaggataatct |
6343263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 6342586 - 6342486
Alignment:
| Q |
147 |
tgaattaagggaatgaacaattatgaaatgaatttgagcaatttttgaaatataataggcaaggtcgaactaaattttgcaagacctaagtataatctac |
246 |
Q |
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| T |
6342586 |
tgaattaatgggatgaataattaggacatggattagagcaatcttcaaaatataataggttaggccgaactaaattttgcaaaatctaagtctaatctac |
6342487 |
T |
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| Q |
247 |
c |
247 |
Q |
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| T |
6342486 |
c |
6342486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 6342731 - 6342683
Alignment:
| Q |
18 |
tgctgctatcagcattggacgtcatgggaagcgaatatggggtacatat |
66 |
Q |
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| T |
6342731 |
tgctgctgtcagcgttggacgtcatgggaagcgtatatggggtacatat |
6342683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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