View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5722_high_16 (Length: 249)

Name: NF5722_high_16
Description: NF5722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5722_high_16
NF5722_high_16
[»] chr3 (9 HSPs)
chr3 (1-69)||(27633601-27633669)
chr3 (1-69)||(34518422-34518490)
chr3 (179-237)||(27633424-27633482)
chr3 (179-237)||(34518206-34518264)
chr3 (1-61)||(34527457-34527517)
chr3 (179-237)||(34527222-34527280)
chr3 (187-232)||(34506623-34506668)
chr3 (179-232)||(27617838-27617891)
chr3 (16-69)||(27618062-27618115)
[»] scaffold1215 (1 HSPs)
scaffold1215 (187-237)||(1387-1437)
[»] chr2 (2 HSPs)
chr2 (187-237)||(10527387-10527437)
chr2 (187-237)||(10534199-10534249)
[»] chr4 (1 HSPs)
chr4 (191-224)||(25273449-25273482)


Alignment Details
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 27633669 - 27633601
Alignment:
Q  1 tttaaaactgaatgggattattatgaaaacctttaaaccaaatcctttacaaatgtttgctgaaacaaa 69  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27633669 tttaaaactcaatgggattattatgaaaacctttaaaccaaatcctttacaaatgtttgctgaaacaaa 27633601  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 34518490 - 34518422
Alignment:
Q  1 tttaaaactgaatgggattattatgaaaacctttaaaccaaatcctttacaaatgtttgctgaaacaaa 69  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34518490 tttaaaactgaatgggattattatgaaaaccttcaaaccaaatcctttacaaatgtttgctgaaacaaa 34518422  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 27633482 - 27633424
Alignment:
Q  179 agacgtagtttgtatgtcaagcaaattggagttcttgttctagaaataacattctgatg 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27633482 agacgtagtttgtatgtcaagcaaattggagttcttgttctagaaataacattctgatg 27633424  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 34518264 - 34518206
Alignment:
Q  179 agacgtagtttgtatgtcaagcaaattggagttcttgttctagaaataacattctgatg 237  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34518264 agacgtagtttgtatgtcaagcaaattggagttcttgctctagaaataacattctgatg 34518206  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 34527517 - 34527457
Alignment:
Q  1 tttaaaactgaatgggattattatgaaaacctttaaaccaaatcctttacaaatgtttgct 61  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  34527517 tttaaaactgaataggattatcatgaaaacctttaaaccaaatcctttacaaatgtttgct 34527457  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 34527280 - 34527222
Alignment:
Q  179 agacgtagtttgtatgtcaagcaaattggagttcttgttctagaaataacattctgatg 237  Q
    ||||||| ||| ||||||| ||||||||||||||| |||||||||||||||||||||||    
T  34527280 agacgtactttttatgtcatgcaaattggagttctcgttctagaaataacattctgatg 34527222  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 34506668 - 34506623
Alignment:
Q  187 tttgtatgtcaagcaaattggagttcttgttctagaaataacattc 232  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  34506668 tttgtatgtcatgcaaattggagttcttgttctagaaataacattc 34506623  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 27617891 - 27617838
Alignment:
Q  179 agacgtagtttgtatgtcaagcaaattggagttcttgttctagaaataacattc 232  Q
    ||||||| ||||| ||||| |||||||||||||||| |||||||||||||||||    
T  27617891 agacgtactttgtctgtcatgcaaattggagttcttattctagaaataacattc 27617838  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 27618115 - 27618062
Alignment:
Q  16 gattattatgaaaacctttaaaccaaatcctttacaaatgtttgctgaaacaaa 69  Q
    |||||| |||||| ||| |||||||||| |||| ||||| ||||||||||||||    
T  27618115 gattatcatgaaagcctctaaaccaaattcttttcaaatctttgctgaaacaaa 27618062  T

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Target: scaffold1215 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1215
Description:

Target: scaffold1215; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 1437 - 1387
Alignment:
Q  187 tttgtatgtcaagcaaattggagttcttgttctagaaataacattctgatg 237  Q
    ||||||||||| ||||| || ||||||||||||||||||||| | ||||||    
T  1437 tttgtatgtcatgcaaaatgaagttcttgttctagaaataacttgctgatg 1387  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 10527437 - 10527387
Alignment:
Q  187 tttgtatgtcaagcaaattggagttcttgttctagaaataacattctgatg 237  Q
    ||||||||||| ||||| || ||||||||||||||||||||| | ||||||    
T  10527437 tttgtatgtcatgcaaaatgaagttcttgttctagaaataacttgctgatg 10527387  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 10534249 - 10534199
Alignment:
Q  187 tttgtatgtcaagcaaattggagttcttgttctagaaataacattctgatg 237  Q
    ||||||||||| ||||| || ||||||||||||||||||||| | ||||||    
T  10534249 tttgtatgtcatgcaaaatgaagttcttgttctagaaataacttgctgatg 10534199  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 25273449 - 25273482
Alignment:
Q  191 tatgtcaagcaaattggagttcttgttctagaaa 224  Q
    |||||||||||||||||||||||||| |||||||    
T  25273449 tatgtcaagcaaattggagttcttgtgctagaaa 25273482  T

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