View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5722_high_20 (Length: 202)
Name: NF5722_high_20
Description: NF5722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5722_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 36210765 - 36210930
Alignment:
| Q |
21 |
tgctgtgtcttcttttcttttttaaaatattggctattcttgttacttgatcagaaggcacagttactaatctgctaccactatttctgctaacatttac |
120 |
Q |
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| T |
36210765 |
tgctgtgtcttcttttcttttttaaaatattggctattcttgttacttgatcagaaggcacagttactaatctgctaccactatttctgctaacattgac |
36210864 |
T |
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| Q |
121 |
atggctgaatcatttgtgtttaatattgctgattcactatttatgaagatgcttcacgatcctatg |
186 |
Q |
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| T |
36210865 |
atggctgaatcatttgtgtttaatattgctgattcactatttatgaagatgcttcacgatcctatg |
36210930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 35978280 - 35978236
Alignment:
| Q |
114 |
catttacatggctgaatcatttgtgtttaatattgctgattcact |
158 |
Q |
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| T |
35978280 |
catttccatggctgaatcatttgtgtttgatattgctcattcact |
35978236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 35999692 - 35999648
Alignment:
| Q |
114 |
catttacatggctgaatcatttgtgtttaatattgctgattcact |
158 |
Q |
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| T |
35999692 |
catttccatggctgaatcatttgtgtttgatattgctcattcact |
35999648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 36216771 - 36216807
Alignment:
| Q |
46 |
aatattggctattcttgttacttgatcagaaggcaca |
82 |
Q |
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| T |
36216771 |
aatattggctattcttgttacttgatctgaaggcaca |
36216807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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