View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5722_high_8 (Length: 367)

Name: NF5722_high_8
Description: NF5722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5722_high_8
NF5722_high_8
[»] scaffold0007 (2 HSPs)
scaffold0007 (13-352)||(73627-73966)
scaffold0007 (22-91)||(74029-74098)
[»] chr6 (10 HSPs)
chr6 (16-334)||(28489037-28489358)
chr6 (16-334)||(29801447-29801768)
chr6 (19-202)||(28475620-28475803)
chr6 (13-202)||(29691311-29691500)
chr6 (16-108)||(29721434-29721526)
chr6 (20-134)||(29672621-29672735)
chr6 (22-91)||(28488902-28488971)
chr6 (22-91)||(29801312-29801381)
chr6 (249-332)||(29757545-29757628)
chr6 (22-102)||(29705167-29705248)
[»] chr3 (1 HSPs)
chr3 (16-297)||(616339-616623)
[»] scaffold0012 (3 HSPs)
scaffold0012 (49-334)||(237197-237475)
scaffold0012 (18-81)||(210594-210657)
scaffold0012 (262-332)||(210697-210767)
[»] chr1 (2 HSPs)
chr1 (22-89)||(5919997-5920064)
chr1 (22-91)||(5919292-5919361)


Alignment Details
Target: scaffold0007 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 13 - 352
Target Start/End: Complemental strand, 73966 - 73627
Alignment:
Q  13 cataggtgaaaaactctcaagattactacaatatgaaagatcaagttcttctagagaaggtaacatgagagatggaataattctgattttggtgcagttt 112  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  73966 cataggtgaaaaactctcaagattactacaatatgaaagttcaagttcttctagagaaggtaacatgagatatggaataattctgattttggtgcagttt 73867  T
Q  113 gtaaccctaaagattttaagctcttcgacaaatccattcaccatgagaggaaagctgtctagttgataacaatgtgaaagatcgagttcttttagtgaag 212  Q
    |||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  73866 gtaaccctcaagattttaagctctccaacaaatccattcaccatgagaggaaagctgtctagttgataacaatgtgaaagattgagttcttctagtgaag 73767  T
Q  213 ccaaactaagaggtggaacagtcttgattgtgcatcttataattctcatgattttaagtttatctagaaaaccaaccgatttatccatcacaattagttt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  73766 ccaaactaagaggtggaacagtcttgattgtgcatcttataatactcatgattttaagtttacctagaaaaccaaccgatttatccatcacaattagttt 73667  T
Q  313 catacaattttgaattgaaaatagatttatgagaaagccc 352  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  73666 catacaattttgaattgaaaatagatttatgagaaagccc 73627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 74098 - 74029
Alignment:
Q  22 aaaactctcaagattactacaatatgaaagatcaagttcttctagagaaggtaacatgagagatggaata 91  Q
    |||||||||||||  | |||||| ||||||||| |||||||||||||||| ||||||||||| |||||||    
T  74098 aaaactctcaagaccaatacaatttgaaagatcgagttcttctagagaagctaacatgagaggtggaata 74029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 334
Target Start/End: Original strand, 28489037 - 28489358
Alignment:
Q  16 aggtgaaaaactctcaagattactacaatatgaaagatcaagttcttctagagaaggtaacatgagagatggaataattctgattttggtgcagtttgta 115  Q
    ||||| |||||||||||||  | |||||| |||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||| || ||| ||    
T  28489037 aggtggaaaactctcaagaccagtacaatctgaaagatcaagttcttctagagaaggtaaaatgagtgatggaataattttgattttggtacaatttata 28489136  T
Q  116 accctaaagattttaagctcttcgacaaatccattcaccatgagaggaaagctgtctagttgataacaatgtgaaagatcgagttcttttagtgaagcca 215  Q
    ||||| ||||||||||| |   | | ||||| ||||||||||||||||||||| |||||   ||||||||||||||  || | |||||  ||||||||||    
T  28489137 acccttaagattttaagtttaccaagaaatctattcaccatgagaggaaagctttctaggctataacaatgtgaaaattctatttcttccagtgaagcca 28489236  T
Q  216 aactaagaggtggaacagtcttgatt---gtgcatcttataattctcatgattttaagtttatctagaaaaccaaccgatttatccatcacaattagttt 312  Q
    |||| |||||||||||| ||  ||||   |  || ||||||||||| | ||||||||||||| | | |||||||| ||||||||| ||  |||||| |||    
T  28489237 aactgagaggtggaacactccggatttcggcacaacttataattctaaagattttaagtttacccaaaaaaccaatcgatttatcaattgcaattacttt 28489336  T
Q  313 catacaattttgaattgaaaat 334  Q
    |  || ||||||||||||||||    
T  28489337 ctcaccattttgaattgaaaat 28489358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 334
Target Start/End: Original strand, 29801447 - 29801768
Alignment:
Q  16 aggtgaaaaactctcaagattactacaatatgaaagatcaagttcttctagagaaggtaacatgagagatggaataattctgattttggtgcagtttgta 115  Q
    ||||| |||||||||||||  | |||||| |||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||| || ||| ||    
T  29801447 aggtggaaaactctcaagaccagtacaatctgaaagatcaagttcttctagagaaggtaaaatgagtgatggaataattttgattttggtacaatttata 29801546  T
Q  116 accctaaagattttaagctcttcgacaaatccattcaccatgagaggaaagctgtctagttgataacaatgtgaaagatcgagttcttttagtgaagcca 215  Q
    ||||| ||||||||||| |   | | ||||| ||||||||||||||||||||| |||||   ||||||||||||||  || | |||||  ||||||||||    
T  29801547 acccttaagattttaagtttaccaagaaatctattcaccatgagaggaaagctttctaggctataacaatgtgaaaattctatttcttccagtgaagcca 29801646  T
Q  216 aactaagaggtggaacagtcttgatt---gtgcatcttataattctcatgattttaagtttatctagaaaaccaaccgatttatccatcacaattagttt 312  Q
    |||| |||||||||||| ||  ||||   |  || ||||||||||| | ||||||||||||| | | |||||||| ||||||||| ||  |||||| |||    
T  29801647 aactgagaggtggaacactccggatttcggcacaacttataattctaaagattttaagtttacccaaaaaaccaatcgatttatcaattgcaattacttt 29801746  T
Q  313 catacaattttgaattgaaaat 334  Q
    |  || ||||||||||||||||    
T  29801747 ctcaccattttgaattgaaaat 29801768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 28475620 - 28475803
Alignment:
Q  19 tgaaaaactctcaagattactacaatatgaaagatcaagttcttctagagaaggtaacatgagagatggaataattctgattttggtgcagtttgtaacc 118  Q
    ||||||||| |||||| || |||||| | ||||||| |||||||||||||||||||||| ||||||| |||||| |||||||||| ||||   | |||||    
T  28475620 tgaaaaactgtcaagactagtacaatctaaaagatcgagttcttctagagaaggtaacacgagagattgaataagtctgattttgctgcaacctataacc 28475719  T
Q  119 ctaaagattttaagctcttcgacaaatccattcaccatgagaggaaagctgtctagttgataacaatgtgaaagatcgagttct 202  Q
    || ||||||||||| ||| | | ||||||| |||||| ||||||||| || |||||   || ||| |||||||||| |||||||    
T  28475720 ctcaagattttaagttctccaagaaatccactcaccacgagaggaaaactttctagactatgacagtgtgaaagattgagttct 28475803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 29691311 - 29691500
Alignment:
Q  13 cataggtgaaaaactctcaagattactacaatatgaaagatcaagttcttctagagaaggtaacatgagagatggaataattctgattttggtgcagttt 112  Q
    |||| |||||||||| |||||| || |||||| | ||||||| |||||||||||||||||||||| |||||||||||||| |||||||||| |||    |    
T  29691311 catatgtgaaaaactgtcaagactagtacaatctaaaagatcgagttcttctagagaaggtaacacgagagatggaataagtctgattttgctgctacct 29691410  T
Q  113 gtaaccctaaagattttaagctcttcgacaaatccattcaccatgagaggaaagctgtctagttgataacaatgtgaaagatcgagttct 202  Q
     ||||||| ||||||||||| ||| | | ||||||| |||||| | ||||||| || |||||   || ||| |||||||||| |||||||    
T  29691411 ataaccctcaagattttaagttctccaagaaatccactcaccacgggaggaaaactttctagactatgacagtgtgaaagattgagttct 29691500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 29721434 - 29721526
Alignment:
Q  16 aggtgaaaaactctcaagattactacaatatgaaagatcaagttcttctagagaaggtaacatgagagatggaataattctgattttggtgca 108  Q
    |||||||||| |||||||||||||||| | ||||||||  |||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  29721434 aggtgaaaaattctcaagattactacactctgaaagatagagttcttctagagaaggtaacatgagaggtggaataattctgatttcggtgca 29721526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 20 - 134
Target Start/End: Original strand, 29672621 - 29672735
Alignment:
Q  20 gaaaaactctcaagattactacaatatgaaagatcaagttcttctagagaaggtaacatgagagatggaataattctgattttggtgcagtttgtaaccc 119  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||| | |   ||||| ||||||  || ||||||    
T  29672621 gaaaaactctcaagattaatacaatatgaaagatcaagtttttctagagagggtaacatgagagatggaagactgtggatttcggtgcaacttataaccc 29672720  T
Q  120 taaagattttaagct 134  Q
    | | |||||||||||    
T  29672721 tcaggattttaagct 29672735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 28488902 - 28488971
Alignment:
Q  22 aaaactctcaagattactacaatatgaaagatcaagttcttctagagaaggtaacatgagagatggaata 91  Q
    ||||||||||||| || |||||| |||||||||||||||||||||||||| ||||||||||| |||||||    
T  28488902 aaaactctcaagactaatacaatctgaaagatcaagttcttctagagaagctaacatgagagttggaata 28488971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 29801312 - 29801381
Alignment:
Q  22 aaaactctcaagattactacaatatgaaagatcaagttcttctagagaaggtaacatgagagatggaata 91  Q
    ||||||||||||| || |||||| |||||||||||||||||||||||||| ||||||||||| |||||||    
T  29801312 aaaactctcaagactaatacaatctgaaagatcaagttcttctagagaagctaacatgagagttggaata 29801381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 249 - 332
Target Start/End: Original strand, 29757545 - 29757628
Alignment:
Q  249 ttataattctcatgattttaagtttatctagaaaaccaaccgatttatccatcacaattagtttcatacaattttgaattgaaa 332  Q
    |||||| ||||| ||||||||||||| |||||||||||||||||||||| ||  |||||||||||  |||||||| ||||||||    
T  29757545 ttataagtctcaagattttaagtttacctagaaaaccaaccgatttatcaattgcaattagtttccaacaatttttaattgaaa 29757628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 29705167 - 29705248
Alignment:
Q  22 aaaactctcaagattactacaatatgaaagatcaagtt-cttctagagaaggtaacatgagagatggaataattctgatttt 102  Q
    |||||||||||||  | ||||||  ||||||||  ||| ||| | |||||||||||||||||||||||||||||||||||||    
T  29705167 aaaactctcaagaccagtacaatccgaaagatctggtttcttttggagaaggtaacatgagagatggaataattctgatttt 29705248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 16 - 297
Target Start/End: Complemental strand, 616623 - 616339
Alignment:
Q  16 aggtgaaaaactctcaagattactacaatatgaaagatcaagttcttctagagaaggtaacatgagagatggaataattctgattttggtgcagtttgta 115  Q
    |||| ||||| ||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||    
T  616623 aggtaaaaaattctcaagattagtacaatctgaaagatcgagttcttctagagaaggtaacatgagagatggaataattttgattttggtgcattttata 616524  T
Q  116 accctaaagattttaagctcttcgacaaatccattcaccatgagaggaaagctgtctagttgataacaatgtgaaagatcgagttcttttagtgaagcca 215  Q
    | ||| ||||||||||| ||| | | |||||||||||||| ||||||||| || |||||   ||||||| |||||||||| |||||||  | ||||||||    
T  616523 atccttaagattttaagttctccaaaaaatccattcaccaggagaggaaaactttctagactataacaacgtgaaagatcaagttcttccaatgaagcca 616424  T
Q  216 aactaagaggtggaacagtcttgatt---gtgcatcttataattctcatgattttaagtttatctagaaaaccaaccgatttatc 297  Q
    || | ||||| |||||| ||| ||||   |||||   ||||| ||||| |||||||||||||   | ||||||||| ||||||||    
T  616423 aattgagaggcggaacactctggattttggtgcaatctataaatctcaagattttaagtttacgcaaaaaaccaactgatttatc 616339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 49 - 334
Target Start/End: Original strand, 237197 - 237475
Alignment:
Q  49 aagatcaagttcttctagagaaggtaacatgagagatggaataattctgattttggtgcagtttgtaaccctaaagattttaagctcttcgacaaatcca 148  Q
    |||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||   | ||||||| ||||||||||| | | | |||||||||    
T  237197 aagatcgagttcttctagagaaggtaatatgagagatggaataattttgattttggtgcatcctataaccctcaagattttaagttttccaacaaatcca 237296  T
Q  149 ttcaccatgagaggaaagctgtctagttgataacaatgtgaaagatcgagttcttttagtgaagccaaactaagaggtggaacagtcttgatt---gtgc 245  Q
    ||||||          | || |||||   |||||||| |||||  ||||||||||  | |||||||||||| |||||||||||| ||   |||   ||||    
T  237297 ttcacc----------acctttctagactataacaatatgaaaattcgagttcttccaatgaagccaaactgagaggtggaacactccgtattttggtgc 237386  T
Q  246 atcttataattctcatgattttaagtttatctagaaaaccaaccgatttatccatcacaattagtttcatacaattttgaattgaaaat 334  Q
    | ||||||| ||||| |||||||||||| |  | | |||||||||||||||| ||   ||||||||   ||||||||||||||||||||    
T  237387 aacttataaatctcaagattttaagtttctgcaaataaccaaccgatttatcaattgtaattagttgattacaattttgaattgaaaat 237475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 210594 - 210657
Alignment:
Q  18 gtgaaaaactctcaagattactacaatatgaaagatcaagttcttctagagaaggtaacatgag 81  Q
    ||||||||| ||||||| |||||||   ||||||||||||||||||||||||||||||||||||    
T  210594 gtgaaaaaccctcaagaatactacatcctgaaagatcaagttcttctagagaaggtaacatgag 210657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 332
Target Start/End: Original strand, 210697 - 210767
Alignment:
Q  262 gattttaagtttatctagaaaaccaaccgatttatccatcacaattagtttcatacaattttgaattgaaa 332  Q
    ||||||||||||| |||||||||||||||||||||| ||  ||||||||| |  |||||||| ||||||||    
T  210697 gattttaagtttacctagaaaaccaaccgatttatcaattgcaattagttcccaacaatttttaattgaaa 210767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 5919997 - 5920064
Alignment:
Q  22 aaaactctcaagattactacaatatgaaagatcaagttcttctagagaaggtaacatgagagatggaa 89  Q
    ||||||||| ||||||  ||||||||||||||||||| |||||| |||||  ||| |||||| |||||    
T  5919997 aaaactctcgagattatcacaatatgaaagatcaagtacttctaaagaagccaacttgagaggtggaa 5920064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 5919292 - 5919361
Alignment:
Q  22 aaaactctcaagattactacaatatgaaagatcaagttcttctagagaaggtaacatgagagatggaata 91  Q
    |||||||||||| |||  ||||||||||||||||||  ||||||| ||||  ||| |||||| |||||||    
T  5919292 aaaactctcaaggttatcacaatatgaaagatcaagaacttctagcgaagcaaacttgagaggtggaata 5919361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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