View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5722_high_9 (Length: 338)

Name: NF5722_high_9
Description: NF5722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5722_high_9
NF5722_high_9
[»] chr3 (2 HSPs)
chr3 (32-325)||(16859353-16859646)
chr3 (32-115)||(36100162-36100242)
[»] chr4 (2 HSPs)
chr4 (32-312)||(14198974-14199252)
chr4 (235-287)||(36040229-36040281)
[»] chr7 (3 HSPs)
chr7 (32-270)||(46742109-46742347)
chr7 (235-305)||(46372643-46372713)
chr7 (256-307)||(29054370-29054421)
[»] chr8 (2 HSPs)
chr8 (235-307)||(37742525-37742597)
chr8 (235-307)||(44842827-44842899)
[»] chr5 (2 HSPs)
chr5 (235-307)||(20407144-20407216)
chr5 (235-307)||(34985448-34985520)
[»] chr2 (1 HSPs)
chr2 (235-307)||(13098790-13098862)
[»] chr1 (6 HSPs)
chr1 (235-307)||(11166392-11166464)
chr1 (235-307)||(41768344-41768416)
chr1 (235-307)||(50986105-50986177)
chr1 (235-305)||(4296731-4296801)
chr1 (235-301)||(37382116-37382182)
chr1 (204-277)||(30217215-30217288)
[»] chr6 (1 HSPs)
chr6 (235-289)||(27830956-27831010)


Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 32 - 325
Target Start/End: Original strand, 16859353 - 16859646
Alignment:
Q  32 cacagacaggtaaaataatttcttttcatctttacaaaaccatgaaaatgatcattaaactcattatttctttaattttttatcttcattttattgttga 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16859353 cacagacaggtaaaataatttcttttcatctttacaaaaccatgaaaatgatcattaaactcattatttctttaattttttatcttcattttattgttga 16859452  T
Q  132 gcttcatatgacatatttaacaaactatagaatcttcaacatcacatatgaggcaaaacaagaaaatgtataaagatgagaagttaaagaaagaatacat 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16859453 gcttcatatgacatatttaacaaactatagaatcttcaacatcacatatgaggcaaaacaagaaaatgtataaagatgagaagtaaaagaaagaatacat 16859552  T
Q  232 atccaaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcattagaaaatgctgatgattgtg 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16859553 atccaaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcattagaaaatgctgatgattgtg 16859646  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 36100242 - 36100162
Alignment:
Q  32 cacagacaggtaaaataatttcttttcatctttacaaaaccatgaaaatgatcattaaactcattatttctttaattttttatc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||    
T  36100242 cacagacaggtaaaataatttcttttcatctttacaaaaccatgaaaatgatcattaaactc---atttctttaattttttatc 36100162  T

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Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 32 - 312
Target Start/End: Original strand, 14198974 - 14199252
Alignment:
Q  32 cacagacaggtaaaataatttcttttcatctttacaaaaccatgaaaatgatcattaaactcattatttctttaattttttatcttcattttattgttga 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14198974 cacagacaggtaaaataatttcttttcatctttacaaaaccatgaaaatgatcattaaactcattatttctttaatttttcatcttcattttattgttga 14199073  T
Q  132 gcttcatatgacatatttaacaaactatagaatcttcaacatcacatatgaggcaaaacaagaaaatgtataaagatgagaagttaaagaaagaatacat 231  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14199074 gcttcatatgacat--ttaacaaactatagaatcttcaacatcacatatgaggcaaaacaagaaaatgtataaagatgagaagtaaaagaaagaatacat 14199171  T
Q  232 atccaaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcattagaaaat 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14199172 atccaaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcattagaaaat 14199252  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 36040281 - 36040229
Alignment:
Q  235 caaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaat 287  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36040281 caaaaacagtcctaacacaattttaaaattatatcaacaacaaaaaagcaaat 36040229  T

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Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 32 - 270
Target Start/End: Complemental strand, 46742347 - 46742109
Alignment:
Q  32 cacagacaggtaaaataatttcttttcatctttacaaaaccatgaaaatgatcattaaactcattatttctttaattttttatcttcattttattgttga 131  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46742347 cacagacaggtaaaataatttcttttcatctttacaaaatcatgaaaatgatcattaaactcattatttctttaattttttatcttcattttattgttga 46742248  T
Q  132 gcttcatatgacatatttaacaaactatagaatcttcaacatcacatatgaggcaaaacaagaaaatgtataaagatgagaagttaaagaaagaatacat 231  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  46742247 gcttcatatgacatatttaacaaactacagaatcttcaacatcacatatgaggcaaaacaagaaaatgtataaagatgagaagttaaagaaataatacat 46742148  T
Q  232 atccaaaaacagtcctaacacaattttacaattatatca 270  Q
    |||||||||||||||||||||||||||||||||||||||    
T  46742147 atccaaaaacagtcctaacacaattttacaattatatca 46742109  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 46372713 - 46372643
Alignment:
Q  235 caaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcatt 305  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  46372713 caaaaacagtcctaacacaattttataattatatcaacaacaaaaaagcaaatatacaaaatatattcatt 46372643  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 256 - 307
Target Start/End: Complemental strand, 29054421 - 29054370
Alignment:
Q  256 tttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 307  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29054421 tttataattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 29054370  T

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Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 37742525 - 37742597
Alignment:
Q  235 caaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37742525 caaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 37742597  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 235 - 307
Target Start/End: Complemental strand, 44842899 - 44842827
Alignment:
Q  235 caaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 307  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44842899 caaaaacagtcctaacacaattttaaaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 44842827  T

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Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 235 - 307
Target Start/End: Complemental strand, 20407216 - 20407144
Alignment:
Q  235 caaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 307  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20407216 caaaaacagtcctaacacaattttaaaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 20407144  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 34985448 - 34985520
Alignment:
Q  235 caaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 307  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34985448 caaaaacagtcttaacacaattttaaaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 34985520  T

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Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 13098790 - 13098862
Alignment:
Q  235 caaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 307  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13098790 caaaaacagtcctaacacaattttaaaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 13098862  T

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Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 235 - 307
Target Start/End: Complemental strand, 11166464 - 11166392
Alignment:
Q  235 caaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 307  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11166464 caaaaacagtcctaacacaattttacaattatatcaacaaaaaaaaagcaaatatacaaaatatattcattag 11166392  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 41768344 - 41768416
Alignment:
Q  235 caaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 307  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41768344 caaaaacagtcctaacacaattttaaaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 41768416  T

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Target: chr1; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 50986105 - 50986177
Alignment:
Q  235 caaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 307  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50986105 caaaaacagtcctaacacaattttaaaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 50986177  T

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Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 4296801 - 4296731
Alignment:
Q  235 caaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcatt 305  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4296801 caaaaacagtcctaacacaattttaaaattatatcaacaacaaaaaagcaaatatacaaaatatattcatt 4296731  T

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Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 235 - 301
Target Start/End: Original strand, 37382116 - 37382182
Alignment:
Q  235 caaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatatt 301  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37382116 caaaaacagtcctaacacaattttaaaattatatcaacaacaaaaaagcaaatatacaaaatatatt 37382182  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 30217215 - 30217288
Alignment:
Q  204 aagatgagaagttaaagaaagaatacatatccaaaaacagtcctaacacaattttacaattatatcaacaacaa 277  Q
    |||||||| ||||| ||| | |||||||||||||| |||||||||||| |||||||||||||| || |||||||    
T  30217215 aagatgagtagttagagagaaaatacatatccaaacacagtcctaacataattttacaattatctctacaacaa 30217288  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 27831010 - 27830956
Alignment:
Q  235 caaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatat 289  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27831010 caaaaacagtcctaacacaattttaaaattatatcaacaacaaaaaagcaaatat 27830956  T

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