View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5722_low_1 (Length: 1431)
Name: NF5722_low_1
Description: NF5722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5722_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 1304; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 1304; E-Value: 0
Query Start/End: Original strand, 20 - 1347
Target Start/End: Complemental strand, 39167542 - 39166215
Alignment:
| Q |
20 |
gctattagattaaggctgctgtttctgcgctctggaacactcgtggcttgaactggcctggctcatttgagcaacagaggcagagaaccggagatttgga |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39167542 |
gctattagattaaggctgctgtttctgcgctctggaacactcgtggcttgaactggcctggctcatttgagcaacagaggcagagaaccggagatttgga |
39167443 |
T |
|
| Q |
120 |
catgcttgattggcttagagcaatatttggcttccaggtatgtatttcgtacacagaatatggaagaaaaagatttattgttgaccaaatttttgtatgg |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39167442 |
catgcttgattggcttagagcaatatttggcttccaggtatgtatttcgtacacagaatatggaagaaaaagatttattgttgaccaaatttttgtatgg |
39167343 |
T |
|
| Q |
220 |
cctccatcaattgtttatgtatctggtttatttgagtacagaaggacagcgtgaggaatcaaagagagcatttgattctgcttcttgctaactcgcatat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39167342 |
cctccatcaattgtttatgtatctggtttatttgagtacagaaggacagcgtgaggaatcaaagagagcatttgattctgcttcttgctaactcgcatat |
39167243 |
T |
|
| Q |
320 |
aaggctacaccctaaacccgagccttttaacaaggcatgtatctgtttcatactttctctgtttcaggcaaaataaaagccaaaactgtaatcaaaagaa |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39167242 |
aaggctacaccctaaacccgagccttttaacaaggcatgtatctgtttcatactttctctgtttcaggcaaaataaaagccaaaactgtaatcaaaagaa |
39167143 |
T |
|
| Q |
420 |
cactagtcggtaattgaattcacatgttttttctctgctttccttttgattttatcattccagctcgatgatcgtgctgttgattctgtgatgaaagaac |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39167142 |
cactagtcggtaattgaattcacatgttttttctctgctttccttatgattttatcattccagctcgatgatcgtgctgttgattctgtgatgaaagaac |
39167043 |
T |
|
| Q |
520 |
tttttaagaattacaaaacgtggtgcaaattcttgggacggaagcatagtttgcggtgagatataactatatcagcatcaacgaacatttgcgcttttat |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39167042 |
tttttaagaattacaaaacgtggtgcaaattcttgggacggaagcatagtttgcggtgagatataactatatcagcatcaacgaacatttgcgcttttat |
39166943 |
T |
|
| Q |
620 |
cttttgccttatgaatttaaagaataaaatctgaaattgtttatggttaaaagtgtttatgctgttcttttacagactgcctcaaggtcagccagacata |
719 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39166942 |
cttttgccttatgaattcaaagaataaaatctgaaattgtttatggttaaaagtgtttatgctgttcttttacagactgcctcaaggtcagccagacata |
39166843 |
T |
|
| Q |
720 |
cagcagaggaagttgctttatatgggattgtatcttctcatttggggtgaagcgtcaaatgttcgattcatgccagagtgtctgtgctatatatttcaca |
819 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39166842 |
cagcagaggaagttgctttatatgggattgtatcttctcatttggggtgaagcgtcaaatgttcgattcatgccagagtgtctgtgctatatatttcaca |
39166743 |
T |
|
| Q |
820 |
atgtgagtacaaatataccacatgtttcactatatcttgtgccacaatgtcttcgcaattgaaatataatggtcttctctttaatctttttaaatttatt |
919 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39166742 |
atgtgagtacaaatataccacatgtttcactatatcttgtgccacaatgtctttgcaattgaaatataatggtcttctctttaatctttttaaatttatt |
39166643 |
T |
|
| Q |
920 |
agtcatttgcacatttgctaataatggccaagtatgacatcagatggcatatgaactgcatggtttattggctggaaatgtcagcattgtcactggtgaa |
1019 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39166642 |
agtcatttgcacatttgctaataatggccaagtatgacatcagatggcatatgaactgcatggtttattggctggaaatgtcagcattgtcactggtgaa |
39166543 |
T |
|
| Q |
1020 |
aatatcaagccttcttatggtggagatgacgaggcattcctacgaaaggttatcacacccctataccgagtaattgagaaggtgtgattttatctcacat |
1119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39166542 |
aatatcaagccttcttatggtggagatgacgaggcattcctacgaaaggttatcacacccatataccgagtaattgagaaggtgtgattttatttcacat |
39166443 |
T |
|
| Q |
1120 |
ggacattgttgtaatatctcaggtgcctatgttccctgtaatgatttgcaaaattgtaataaccatgttgatcattccaggaatctaagaaaagcagaaa |
1219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39166442 |
ggacattgttgtaatatctcaggtgcctatgttccctgtaatgatttgcaaaattgtaataaccatgttgatcattccaggaatctaagaaaagcagaaa |
39166343 |
T |
|
| Q |
1220 |
tggaaaggctgcacactcagcatggtccaactatgatgatctaaatgagtatttttggtttgttttccttcagaattttattgctaaaattgacttggtt |
1319 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39166342 |
tggaaaggcttcacactcagcatggtccaactatgatgatctaaatgagtatttttggtttgttttccttcagaattttattgctaaaattgacttggtt |
39166243 |
T |
|
| Q |
1320 |
cgtttcatttcgtcattcattacttgac |
1347 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
39166242 |
cgtttcatttcgtcattcattacttgac |
39166215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 1372 - 1418
Target Start/End: Complemental strand, 39166190 - 39166144
Alignment:
| Q |
1372 |
caggtcacttgattgcttttctcttggatggcctatgcgtgatgatg |
1418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39166190 |
caggtcacttgattgcttttctcttggatggcctatgcgtgatgatg |
39166144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 9e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 9e-55
Query Start/End: Original strand, 1214 - 1347
Target Start/End: Complemental strand, 5539224 - 5539091
Alignment:
| Q |
1214 |
cagaaatggaaaggctgcacactcagcatggtccaactatgatgatctaaatgagtatttttggtttgttttccttcagaattttattgctaaaattgac |
1313 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
5539224 |
cagaaatggaaaggcttcacactcagcatggtgcaactatgatgatctaaatgagtatttttggtttgttttccttcagaattttattactaaaattgac |
5539125 |
T |
|
| Q |
1314 |
ttggttcgtttcatttcgtcattcattacttgac |
1347 |
Q |
| |
|
|||||| |||||||||| |||| ||||||||||| |
|
|
| T |
5539124 |
ttggtttgtttcatttcatcatgcattacttgac |
5539091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1372 - 1418
Target Start/End: Complemental strand, 5539066 - 5539020
Alignment:
| Q |
1372 |
caggtcacttgattgcttttctcttggatggcctatgcgtgatgatg |
1418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5539066 |
caggtcacttgattgcttttctcttggatggcctataggtgatgatg |
5539020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 3e-39; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 691 - 826
Target Start/End: Complemental strand, 43964353 - 43964218
Alignment:
| Q |
691 |
acagactgcctcaaggtcagccagacatacagcagaggaagttgctttatatgggattgtatcttctcatttggggtgaagcgtcaaatgttcgattcat |
790 |
Q |
| |
|
||||||| ||||||||||||| ||| ||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||| |||| ||||| |
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|
| T |
43964353 |
acagacttcctcaaggtcagcaagagatacaacagagaaagttgctttatatgggcttgtatcttctcatatggggtgaagcgtccaatcttcgcttcat |
43964254 |
T |
|
| Q |
791 |
gccagagtgtctgtgctatatatttcacaatgtgag |
826 |
Q |
| |
|
|||||||||| | ||||| ||||||||||||||||| |
|
|
| T |
43964253 |
gccagagtgtatatgctacatatttcacaatgtgag |
43964218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 5e-38
Query Start/End: Original strand, 959 - 1072
Target Start/End: Complemental strand, 43964103 - 43963990
Alignment:
| Q |
959 |
tcagatggcatatgaactgcatggtttattggctggaaatgtcagcattgtcactggtgaaaatatcaagccttcttatggtggagatgacgaggcattc |
1058 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||| |
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|
| T |
43964103 |
tcagatggcatatgaacttcatggtttattggctggaaatgtcagcattgttactggtgaaaatatcaaaccttcttatggtggtgatgatgaggcattc |
43964004 |
T |
|
| Q |
1059 |
ctacgaaaggttat |
1072 |
Q |
| |
|
| || |||||||| |
|
|
| T |
43964003 |
ttgcgcaaggttat |
43963990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 43965044 - 43964907
Alignment:
| Q |
25 |
tagattaaggctgctgtttctgcgctctggaacactcgtggcttgaactggcctggctcatttgagcaacagaggcagagaaccggagatttggacatgc |
124 |
Q |
| |
|
||||||||||| |||||||||||||| | || ||||||||||||||||||||| | |||| |||||| | |||||||| ||||||||||| ||| |
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|
| T |
43965044 |
tagattaaggcagctgtttctgcgctttttaatactcgtggcttgaactggcctagtgcattcgagcaaactcgccagagaactggagatttggatctgc |
43964945 |
T |
|
| Q |
125 |
ttgattggcttagagcaatatttggcttccaggtatgt |
162 |
Q |
| |
|
|||||||||| ||||| || ||||| ||||||| |||| |
|
|
| T |
43964944 |
ttgattggctcagagccatgtttgggttccaggcatgt |
43964907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1197 - 1284
Target Start/End: Complemental strand, 43963868 - 43963781
Alignment:
| Q |
1197 |
caggaatctaagaaaagcagaaatggaaaggctgcacactcagcatggtccaactatgatgatctaaatgagtatttttggtttgttt |
1284 |
Q |
| |
|
|||||| || |||||||||||||||||| |||| | |||||||| |||| ||| || |||||||||||||||||||| ||||| |||| |
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|
| T |
43963868 |
caggaagctgagaaaagcagaaatggaatggctcctcactcagcctggtgcaattacgatgatctaaatgagtatttctggttagttt |
43963781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 273 - 354
Target Start/End: Complemental strand, 43964785 - 43964704
Alignment:
| Q |
273 |
aggaatcaaagagagcatttgattctgcttcttgctaactcgcatataaggctacaccctaaacccgagccttttaacaagg |
354 |
Q |
| |
|
|||||||| ||||||||| | ||| |||||||||||||| ||||||||||||||||| |||||||||||| | ||||||| |
|
|
| T |
43964785 |
aggaatcagagagagcatctaattttgcttcttgctaacaaccatataaggctacaccccaaacccgagcctctcaacaagg |
43964704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000009
Query Start/End: Original strand, 522 - 579
Target Start/End: Complemental strand, 43964521 - 43964464
Alignment:
| Q |
522 |
tttaagaattacaaaacgtggtgcaaattcttgggacggaagcatagtttgcggtgag |
579 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||| || |||||||| ||||||| |
|
|
| T |
43964521 |
tttaagaattacaaaacatggtgcaaatttttgggacgaaaacatagtttacggtgag |
43964464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1372 - 1418
Target Start/End: Complemental strand, 43963681 - 43963635
Alignment:
| Q |
1372 |
caggtcacttgattgcttttctcttggatggcctatgcgtgatgatg |
1418 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43963681 |
caggacacctgattgcttttctcttggatggcccatgcgtgatgatg |
43963635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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