View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5722_low_18 (Length: 228)
Name: NF5722_low_18
Description: NF5722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5722_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 45521622 - 45521821
Alignment:
| Q |
13 |
gagtagcatagcacaacaagtagatggagagagtccaaatctatattacagaagtgaagatgtgatactttgtgtacttcctctgtttcatatttattca |
112 |
Q |
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| T |
45521622 |
gagtagcattgcacagcaagtagatggagagaatccaaatctatattacagaagtgaagatgtgatactttgtgtgcttcctctgtttcatatttattca |
45521721 |
T |
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| Q |
113 |
ctaaactctgttttgctctgtggactcagagccaaagctaccattctcttgatgccaaaattcgatataaattcattcttgaatcttgttaacaaacatg |
212 |
Q |
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| T |
45521722 |
ctaaactctgttttgctctgtggactcagagccaaagctaccattctcttgatgccaaaattcgatataaattcattcttgaatcttgttaacaaacatg |
45521821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 350628 - 350746
Alignment:
| Q |
17 |
agcatagcacaacaagtagatggagagagtccaaatctatattacagaagtgaagatgtgatactttgtgtacttcctctgtttcatatttattcactaa |
116 |
Q |
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||||||||||||||||| |||||||| | ||||||||||||||| ||||||||||| ||||| ||||| ||||| ||||||||||||| ||||| | |
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| T |
350628 |
agcatagcacaacaagttgatggagaaaatccaaatctatattatcacagtgaagatgtcatactatgtgttcttcccatgtttcatatttactcactca |
350727 |
T |
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| Q |
117 |
actctgttttgctctgtgg |
135 |
Q |
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|||| |||||||| ||||| |
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| T |
350728 |
actcagttttgctttgtgg |
350746 |
T |
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