View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5722_low_20 (Length: 220)
Name: NF5722_low_20
Description: NF5722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5722_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 6343708 - 6343528
Alignment:
| Q |
20 |
tatattactttcaatttgatttgatgtatgaaaaaatataagttgcttttggtcaaacaaaaaagagagggagatagggcaagaactttgagtgtgaaaa |
119 |
Q |
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| T |
6343708 |
tatattactttcaatttgatttgatgaatgaaaaaatataagttgcttttggtcaaacaaaaaagag--ggagagagggcaagaactttgagtgtgaaaa |
6343611 |
T |
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| Q |
120 |
ggttagagttttgggatagtaaaattagagaagacaaaactaatgcaataaagaataagatcacatgaagtgtgtggtttcat |
202 |
Q |
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| T |
6343610 |
ggttagagttttgggatagtaaaattagtgaagaaaaaacgaatgcaataaagaataagatcacgtgaagtgtgtggtttcat |
6343528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 22 - 191
Target Start/End: Complemental strand, 6342917 - 6342740
Alignment:
| Q |
22 |
tattactttcaatttgatttgatgtatgaaaaaatataagttgcttttggtcaaacaa-aaaagaga-----gggagatagggcaagaactttgagtgtg |
115 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||| ||||| | ||| || |||||| | |||||| ||||||||||||||||||||| |
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| T |
6342917 |
tattactttcaatttgatttgatgaatgaaaatatataagttgtttttgttaaaaaaagaaaagaaaaaaacgggagacagggcaagaactttgagtgtg |
6342818 |
T |
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| Q |
116 |
aaaaggttagagttttgggatagtaaaattagagaagacaaaacta---atgcaataaagaataagatcacatgaagtg |
191 |
Q |
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| T |
6342817 |
aaaatgttagag-ttcggtatagtaaaattagaaaataaaaaactaactatgcaataaggaacaagatcacgtgaagtg |
6342740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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