View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5722_low_3 (Length: 640)
Name: NF5722_low_3
Description: NF5722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5722_low_3 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 105 - 640
Target Start/End: Original strand, 12640099 - 12640629
Alignment:
| Q |
105 |
aatctatcaatattttgtttgtgtggattcacctcatacttat---gctta--aaatctcgagaacctcgttgcgaaaatagattcccgcgggtgtcgtg |
199 |
Q |
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|||||||||| || |||||||||||||| || |||||||||| ||||| |||||||| || ||||||||||||||||| ||||||||||||| ||| |
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| T |
12640099 |
aatctatcaacgttatgtttgtgtggattaacgtcatacttattatgcttataaaatctcgcgagcctcgttgcgaaaatagtttcccgcgggtgttgtg |
12640198 |
T |
|
| Q |
200 |
cggacgtaataatccaataataa--tataatctcgtgaggattaagaatggaatttctcttcttatatctttacacgttgtttttgaggattaatctatt |
297 |
Q |
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||||| ||||| ||||||||| |||||| |||||||||||||||||| ||||||| ||| |||| |||||||| || ||||||||||| |||| |
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| T |
12640199 |
cggac---ataattcaataataaaatataatttcgtgaggattaagaatgaaatttcttttcaataatctatacacgttagttgtgaggattaatatatt |
12640295 |
T |
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| Q |
298 |
cgt----cnnnnnnnnnnnnnnnntaataatctcgtgtgtctcgtg-gtaaaaagaatataatctcatgcgtctcgtggggacataattcaataataaat |
392 |
Q |
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||| | ||||||||||||| |||||||| ||||||| |||||||||||| |||||||||| ||| ||||||||||||||||| |
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| T |
12640296 |
cgtatctctttctgtcaaaaaaaataataatctcgtgggtctcgtgcgtaaaaa-aatataatctcaggcgtctcgtgcggatataattcaataataaat |
12640394 |
T |
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| Q |
393 |
aaatagcgagataaagcttgaacagttgaataattaaaaagactgattgagtattagagaaaattgattagcaattctttcccctcaaaa--------aa |
484 |
Q |
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| | |||||||| |||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||| || |
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| T |
12640395 |
a----gtgagataaaccttgaa----------------aagactaattgagtattagagaaaattgatcagcaattatttcccctcaaaagaaaaaaaaa |
12640474 |
T |
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| Q |
485 |
gttgtatcagcaatggaaaacggtgttggagttgaacggccattgaaacttcacatgcttccatttctatcaccaggtcatatgattcctttgggtgaca |
584 |
Q |
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| T |
12640475 |
actg-atcagcaatggaagatggtgttggagttgaacggccattgaaacttctcatacttccatttctagcacctggtcatatgattcctttgggtgaca |
12640573 |
T |
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| Q |
585 |
tagcagctctgtttgcatcccatggccaacaagtcacaatcatcaccactccctcc |
640 |
Q |
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| T |
12640574 |
tagcagctttgtttgcatcccatggccaacaagtcacgatcatcaccactccctcc |
12640629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 6e-42; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 509 - 640
Target Start/End: Complemental strand, 48963451 - 48963320
Alignment:
| Q |
509 |
gttggagttgaacggccattgaaacttcacatgcttccatttctatcaccaggtcatatgattcctttgggtgacatagcagctctgtttgcatcccatg |
608 |
Q |
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|||| ||||||||| ||||||||||||||| | |||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
48963451 |
gttgaagttgaacgaccattgaaacttcacttcattccatatcttgcacctggtcatatgattcctttgggtgacatagcagctctgtttgcgtcccgtg |
48963352 |
T |
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| Q |
609 |
gccaacaagtcacaatcatcaccactccctcc |
640 |
Q |
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| T |
48963351 |
gccaacaagtcacaatcatcaccactccctcc |
48963320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 528 - 640
Target Start/End: Complemental strand, 48959290 - 48959178
Alignment:
| Q |
528 |
tgaaacttcacatgcttccatttctatcaccaggtcatatgattcctttgggtgacatagcagctctgtttgcatcccatggccaacaagtcacaatcat |
627 |
Q |
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||||||||||| | |||||| || | |||| || |||||||| || || ||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
48959290 |
tgaaacttcacttcattccatatccagcacctgggcatatgatccccatgtgtgacatagcaactctgtttgcatcccatggccaacaagtgacaatcat |
48959191 |
T |
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| Q |
628 |
caccactccctcc |
640 |
Q |
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||||||||||||| |
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| T |
48959190 |
caccactccctcc |
48959178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 506 - 639
Target Start/End: Complemental strand, 48966500 - 48966367
Alignment:
| Q |
506 |
ggtgttggagttgaacggccattgaaacttcacatgcttccatttctatcaccaggtcatatgattcctttgggtgacatagcagctctgtttgcatccc |
605 |
Q |
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||||||| | || |||| ||| ||||||||||| | |||||| |||| ||||||| |||||||| ||| || ||||||||||| || | |||||||| | |
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| T |
48966500 |
ggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactatctttgcatctc |
48966401 |
T |
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| Q |
606 |
atggccaacaagtcacaatcatcaccactccctc |
639 |
Q |
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|||||||||||||||| |||||||| |||||||| |
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| T |
48966400 |
atggccaacaagtcaccatcatcacaactccctc |
48966367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 506 - 640
Target Start/End: Complemental strand, 13441371 - 13441237
Alignment:
| Q |
506 |
ggtgttggagttgaacggccattgaaacttcacatgcttccatttctatcaccaggtcatatgattcctttgggtgacatagcagctctgtttgcatccc |
605 |
Q |
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||||||| ||| ||||| ||| ||||| ||||| | |||||| |||| || | || |||||||| ||| | ||||||||||| || |||||||||||| |
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| T |
13441371 |
ggtgttgaagtggaacgaccactgaaaattcacttcattccatatctagcatctggacatatgatccctctttgtgacatagcaactatgtttgcatccc |
13441272 |
T |
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| Q |
606 |
atggccaacaagtcacaatcatcaccactccctcc |
640 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
13441271 |
gtggccaacaagtcacaatcatcaccactccctcc |
13441237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 580 - 640
Target Start/End: Complemental strand, 13462481 - 13462421
Alignment:
| Q |
580 |
tgacatagcagctctgtttgcatcccatggccaacaagtcacaatcatcaccactccctcc |
640 |
Q |
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|||||||||| | |||||||||||| ||||||||| |||||| ||||||||||||||||| |
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| T |
13462481 |
tgacatagcaattatgtttgcatcccgtggccaacacgtcacagtcatcaccactccctcc |
13462421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 506 - 637
Target Start/End: Complemental strand, 13449534 - 13449403
Alignment:
| Q |
506 |
ggtgttggagttgaacggccattgaaacttcacatgcttccatttctatcaccaggtcatatgattcctttgggtgacatagcagctctgtttgcatccc |
605 |
Q |
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||||||| |||||||| ||||||||| || || | |||||||||| || | || |||||||| ||| | |||||||||| || |||||||||||| |
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| T |
13449534 |
ggtgttgaagttgaacaaccattgaaagtttacttcattccatttcttgcatctggacatatgatccctctttttgacatagcaactatgtttgcatccc |
13449435 |
T |
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| Q |
606 |
atggccaacaagtcacaatcatcaccactccc |
637 |
Q |
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|||||| ||||| ||| |||||||||||||| |
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| T |
13449434 |
gtggccagcaagtaacagtcatcaccactccc |
13449403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 524 - 638
Target Start/End: Original strand, 12589219 - 12589333
Alignment:
| Q |
524 |
ccattgaaacttcacatgcttccatttctatcaccaggtcatatgattcctttgggtgacatagcagctctgtttgcatcccatggccaacaagtcacaa |
623 |
Q |
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||||| ||||||||| | |||||| ||||||||| || |||||||| ||| | ||||||| ||| | ||||||||||||| ||||||||||||||||| |
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| T |
12589219 |
ccattaaaacttcacttcattccatatctatcacctgggcatatgatccctctatgtgacattgcaaccctgtttgcatcccgtggccaacaagtcacaa |
12589318 |
T |
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| Q |
624 |
tcatcaccactccct |
638 |
Q |
| |
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||| ||||||||||| |
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| T |
12589319 |
tcaccaccactccct |
12589333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 506 - 636
Target Start/End: Original strand, 12482469 - 12482599
Alignment:
| Q |
506 |
ggtgttggagttgaacggccattgaaacttcacatgcttccatttctatcaccaggtcatatgattcctttgggtgacatagcagctctgtttgcatccc |
605 |
Q |
| |
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||||||| ||||||||| ||||||||||||||| | ||||||||| | |||| || |||||||| ||| || | | || ||| ||||||||||||| | |
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| T |
12482469 |
ggtgttgaagttgaacgaccattgaaacttcacttcattccatttccagcacctgggcatatgatccctatgtgcaagattgcaactctgtttgcatcac |
12482568 |
T |
|
| Q |
606 |
atggccaacaagtcacaatcatcaccactcc |
636 |
Q |
| |
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|||||| || |||||||||||||||||||| |
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| T |
12482569 |
gtggccatcatgtcacaatcatcaccactcc |
12482599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 584 - 640
Target Start/End: Original strand, 3416622 - 3416678
Alignment:
| Q |
584 |
atagcagctctgtttgcatcccatggccaacaagtcacaatcatcaccactccctcc |
640 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3416622 |
atagcagctatgtttgcatcccatggccaacatgtcacaatcatcaccactccctcc |
3416678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 506 - 640
Target Start/End: Complemental strand, 12541844 - 12541710
Alignment:
| Q |
506 |
ggtgttggagttgaacggccattgaaacttcacatgcttccatttctatcaccaggtcatatgattcctttgggtgacatagcagctctgtttgcatccc |
605 |
Q |
| |
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||||||| |||||| || ||||| ||| ||||| | |||||| | || || | || |||||||| ||| | |||| |||||| || |||||||||| | |
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| T |
12541844 |
ggtgttgaagttgatcgaccattaaaaattcacttcattccatatttagcatctggacatatgatccctctttgtgatatagcaactttgtttgcatcac |
12541745 |
T |
|
| Q |
606 |
atggccaacaagtcacaatcatcaccactccctcc |
640 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
12541744 |
atggccaacaagtcacaatcatcaccactccctcc |
12541710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 506 - 640
Target Start/End: Complemental strand, 28386499 - 28386365
Alignment:
| Q |
506 |
ggtgttggagttgaacggccattgaaacttcacatgcttccatttctatcaccaggtcatatgattcctttgggtgacatagcagctctgtttgcatccc |
605 |
Q |
| |
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||||||| ||||||| | ||||||||||||||| | |||| | || | || | || |||||||| || | |||| |||||| || |||||||||| | |
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| T |
28386499 |
ggtgttgaagttgaaagaccattgaaacttcacttcattccgtatccagcatctggacatatgatgccactttgtgatatagcaactttgtttgcatcac |
28386400 |
T |
|
| Q |
606 |
atggccaacaagtcacaatcatcaccactccctcc |
640 |
Q |
| |
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||||||||| |||||||||||||||||||||||| |
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|
| T |
28386399 |
gtggccaacatgtcacaatcatcaccactccctcc |
28386365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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