View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5722_low_4 (Length: 582)
Name: NF5722_low_4
Description: NF5722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5722_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 16 - 566
Target Start/End: Complemental strand, 49225290 - 49224740
Alignment:
| Q |
16 |
atgaggagaataagggaaagtgcatagtatgttgaagaataaccataagactcggttttacgacagaagtaacaaacaatgaggagtaataaacagaagc |
115 |
Q |
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| T |
49225290 |
atgaggagaataagggaaagtgcatagtatgttgaagaataaccataagactcggttttacgacagaagtaacaaacaatgaggagtaataaacagaagc |
49225191 |
T |
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| Q |
116 |
caaagcccaagaaccagactgctgcaatgctgaatacaggaactgctgtatatgccgctgactgtattcaataaaaaggaaaaatagtgagtggacttaa |
215 |
Q |
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| T |
49225190 |
caaagcccaagaaccagactgctgcaatgctgaatacaggaactgctgtatatgccgctgactgtattcaataaaaaggaaaaatagtgagtggacttaa |
49225091 |
T |
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| Q |
216 |
tttttggtatgaaaattcaatactacaggactaactaaaaggctaatttaaacacctgaaaattatggttaatcacgtccaaaatcatggttaataagtg |
315 |
Q |
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| T |
49225090 |
tttttggtatgaaaattcaatactgcaggactaactaaaaggctaatttaaacacctgaaaattatggttaatcatgtccaaaatcatggttaataagtg |
49224991 |
T |
|
| Q |
316 |
tagacaactggtatattcattaagcatctaaggaacgtaattgaccatctattagaactgtgttaaccacttacaagttgttgcgaaagtttccataaat |
415 |
Q |
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| T |
49224990 |
tagacaactggtatattcattaagcatctaaggaaagtaattgaacatctattagaactgtgttaaccacttacaaattgtcgcgaaagtttccaaaaat |
49224891 |
T |
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| Q |
416 |
tagttgtccaaaaatcatttataaagtaaactaaaacgcagaataaataaaatcccccacgtaaactaagctcaaaacttaaaccttaattaacaatgat |
515 |
Q |
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| T |
49224890 |
tagttgtccaaaaatcatttataaaataaactaaaacgcagaataaataaaatcccccacgtaaactaagctcaaaacttaaaccttaattaacaatgat |
49224791 |
T |
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| Q |
516 |
aattagcaaaaacagaacaaattatattgagtaagggttgaatgaggttac |
566 |
Q |
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| T |
49224790 |
aattagcaaaaacagaacaaattatattgagtaagggttgaatgaggttac |
49224740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 405
Target Start/End: Original strand, 37557405 - 37557461
Alignment:
| Q |
349 |
aacgtaattgaccatctattagaactgtgttaaccacttacaagttgttgcgaaagt |
405 |
Q |
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||||||||| | || ||||| ||||||||||||||||||| ||||||| |||||||| |
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| T |
37557405 |
aacgtaattaatcacctatttgaactgtgttaaccacttaaaagttgtcgcgaaagt |
37557461 |
T |
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